Detailed information    

insolico Bioinformatically predicted

Overview

Name   pilO   Type   Machinery gene
Locus tag   LDO71_RS01535 Genome accession   NZ_CP084297
Coordinates   333396..334136 (+) Length   246 a.a.
NCBI ID   WP_000076101.1    Uniprot ID   N9LH62
Organism   Acinetobacter baumannii strain LHC22-2     
Function   assembly of type IV pilus (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 328396..339136
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  LDO71_RS01520 (LDO71_01520) ponA 328983..331538 (-) 2556 WP_140334752.1 penicillin-binding protein PBP1a -
  LDO71_RS01525 (LDO71_01525) pilM 331700..332758 (+) 1059 WP_002014066.1 pilus assembly protein PilM Machinery gene
  LDO71_RS01530 (LDO71_01530) pilN 332758..333399 (+) 642 WP_225546078.1 PilN domain-containing protein Machinery gene
  LDO71_RS01535 (LDO71_01535) pilO 333396..334136 (+) 741 WP_000076101.1 type 4a pilus biogenesis protein PilO Machinery gene
  LDO71_RS01540 (LDO71_01540) pilP 334147..334674 (+) 528 WP_000695065.1 pilus assembly protein PilP Machinery gene
  LDO71_RS01545 (LDO71_01545) pilQ 334737..336863 (+) 2127 WP_225546079.1 type IV pilus secretin PilQ Machinery gene
  LDO71_RS01550 (LDO71_01550) aroK 336875..337444 (+) 570 WP_000643712.1 shikimate kinase AroK -
  LDO71_RS01555 (LDO71_01555) aroB 337473..338555 (+) 1083 WP_001193997.1 3-dehydroquinate synthase -

Sequence

Protein


Download         Length: 246 a.a.        Molecular weight: 27819.59 Da        Isoelectric Point: 4.8357

>NTDB_id=610459 LDO71_RS01535 WP_000076101.1 333396..334136(+) (pilO) [Acinetobacter baumannii strain LHC22-2]
MSQDELQELSLEQLSAKKKKFNLDKFLQQFNTLDMNNYGSWPISVKITCWIFIFFAVLALGYFIVIQPKLQAIDNAQAQE
SNLLNEFREKDSKLRNLQQYQVQLQEMQANFNQQLEQLPKETEIPSLVEDINLTGVNSGLKFKNIRLEDEVKQEIFIEQP
IAIEATGDYHAFGAFVSSIAALPRIVTMHDFTVDVSPAKDNKSDIPVLNYSIKAKTYRYVGATDTSEQTGKAPAASASTN
TTVQPK

Nucleotide


Download         Length: 741 bp        

>NTDB_id=610459 LDO71_RS01535 WP_000076101.1 333396..334136(+) (pilO) [Acinetobacter baumannii strain LHC22-2]
ATGAGTCAAGACGAACTTCAAGAATTGTCATTAGAACAATTATCTGCAAAGAAAAAGAAATTTAATCTCGATAAATTCCT
TCAGCAATTTAATACGCTGGATATGAACAACTACGGTAGTTGGCCAATATCTGTAAAAATTACGTGTTGGATTTTTATTT
TCTTTGCTGTGTTAGCTTTGGGGTATTTCATTGTTATTCAACCGAAATTACAAGCTATTGATAATGCTCAAGCTCAGGAA
AGCAATTTATTAAACGAATTTCGTGAAAAAGACTCGAAATTACGTAACCTGCAACAGTATCAGGTACAACTTCAAGAAAT
GCAGGCAAATTTCAACCAGCAACTAGAGCAGTTACCAAAAGAAACTGAGATTCCGAGTTTAGTTGAAGATATCAACTTAA
CAGGAGTGAACTCTGGATTGAAATTTAAAAATATTCGCTTGGAAGATGAAGTAAAACAGGAAATTTTTATTGAGCAACCA
ATTGCCATAGAAGCGACCGGAGACTATCACGCATTTGGAGCTTTTGTAAGTAGTATCGCTGCTTTGCCTCGTATTGTAAC
CATGCACGATTTTACTGTTGATGTATCGCCAGCTAAAGATAACAAGTCTGATATTCCTGTGCTGAACTATTCCATTAAAG
CAAAAACATACCGATACGTAGGGGCAACAGATACATCGGAGCAAACAGGCAAAGCTCCAGCAGCATCTGCTTCAACGAAC
ACTACTGTTCAGCCGAAATAG

Domains

Predicted by InterproScan.

Pilus assembly protein, PilO (PilO)

(73-220)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB N9LH62

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  pilO Acinetobacter baumannii D1279779

100

100

1
  comO Acinetobacter baylyi ADP1

69.421

98.374

0.683