Detailed information    

insolico Bioinformatically predicted

Overview

Name   pilN   Type   Machinery gene
Locus tag   LDO71_RS01530 Genome accession   NZ_CP084297
Coordinates   332758..333399 (+) Length   213 a.a.
NCBI ID   WP_225546078.1    Uniprot ID   -
Organism   Acinetobacter baumannii strain LHC22-2     
Function   assembly of type IV pilus (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 327758..338399
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  LDO71_RS01510 (LDO71_01510) - 327806..328138 (+) 333 WP_000169602.1 hypothetical protein -
  LDO71_RS01515 (LDO71_01515) - 328141..328965 (+) 825 WP_225546077.1 putative RNA methyltransferase -
  LDO71_RS01520 (LDO71_01520) ponA 328983..331538 (-) 2556 WP_140334752.1 penicillin-binding protein PBP1a -
  LDO71_RS01525 (LDO71_01525) pilM 331700..332758 (+) 1059 WP_002014066.1 pilus assembly protein PilM Machinery gene
  LDO71_RS01530 (LDO71_01530) pilN 332758..333399 (+) 642 WP_225546078.1 PilN domain-containing protein Machinery gene
  LDO71_RS01535 (LDO71_01535) pilO 333396..334136 (+) 741 WP_000076101.1 type 4a pilus biogenesis protein PilO Machinery gene
  LDO71_RS01540 (LDO71_01540) pilP 334147..334674 (+) 528 WP_000695065.1 pilus assembly protein PilP Machinery gene
  LDO71_RS01545 (LDO71_01545) pilQ 334737..336863 (+) 2127 WP_225546079.1 type IV pilus secretin PilQ Machinery gene
  LDO71_RS01550 (LDO71_01550) aroK 336875..337444 (+) 570 WP_000643712.1 shikimate kinase AroK -

Sequence

Protein


Download         Length: 213 a.a.        Molecular weight: 24001.38 Da        Isoelectric Point: 5.3968

>NTDB_id=610458 LDO71_RS01530 WP_225546078.1 332758..333399(+) (pilN) [Acinetobacter baumannii strain LHC22-2]
MATINLLPWREELREQRKKQFITLCFGVVVLGITTVFGGWFYFDHKLDDQEQANQLIMSTNQNLDQQLKTLNGLQEQRDA
IIERMKLIQGLQSQRPVVVRLVDELVRVIPSAMYLTKFSRTGDKFTIEGKAESPNTVAELLRNLEASPWYRNAFMNSFLA
NEEKKDKAASSLLPRVEDHYGSFVVTVDLGEMGVATTDDSAKPSTGESVGAAK

Nucleotide


Download         Length: 642 bp        

>NTDB_id=610458 LDO71_RS01530 WP_225546078.1 332758..333399(+) (pilN) [Acinetobacter baumannii strain LHC22-2]
ATGGCAACAATTAATTTACTGCCTTGGCGCGAAGAGCTGAGGGAGCAACGAAAAAAACAATTTATAACGTTATGTTTTGG
GGTGGTTGTTTTGGGGATTACAACCGTATTTGGGGGATGGTTTTATTTTGACCATAAATTAGATGATCAAGAGCAAGCGA
ATCAGCTCATTATGAGCACAAATCAGAACCTTGATCAGCAATTAAAAACATTAAACGGCTTACAGGAACAGCGTGATGCC
ATTATTGAACGCATGAAGTTGATTCAAGGTTTGCAGAGTCAACGTCCAGTAGTGGTAAGACTTGTTGATGAGTTAGTTCG
AGTCATACCATCAGCTATGTATTTAACGAAATTTAGCCGAACCGGAGATAAGTTTACGATTGAAGGTAAAGCTGAAAGTC
CAAATACAGTAGCCGAACTACTCCGTAATCTTGAAGCATCTCCTTGGTATCGTAATGCTTTTATGAACTCTTTCTTGGCT
AATGAAGAGAAAAAAGATAAGGCTGCAAGTTCTCTTCTTCCTAGGGTGGAAGACCACTATGGTAGTTTTGTTGTGACTGT
CGATTTGGGGGAAATGGGCGTGGCCACAACGGATGATTCTGCTAAGCCATCTACAGGTGAAAGTGTGGGGGCTGCTAAAT
GA

Domains

Predicted by InterproScan.

Fimbrial assembly protein (PilN) (PilN)

(100-167)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  pilN Acinetobacter baumannii D1279779

99.061

100

0.991
  comN Acinetobacter baylyi ADP1

72.115

97.653

0.704