Detailed information    

insolico Bioinformatically predicted

Overview

Name   ssb   Type   Machinery gene
Locus tag   LDO71_RS00965 Genome accession   NZ_CP084297
Coordinates   217257..217838 (+) Length   193 a.a.
NCBI ID   WP_001215080.1    Uniprot ID   A0A009T283
Organism   Acinetobacter baumannii strain LHC22-2     
Function   ssDNA binding (predicted from homology)   
DNA processing

Genomic Context

Location: 212257..222838
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  LDO71_RS00940 (LDO71_00940) - 212878..213231 (+) 354 WP_032043402.1 DUF1304 domain-containing protein -
  LDO71_RS00945 (LDO71_00945) - 213284..213625 (+) 342 WP_000263330.1 GlpM family protein -
  LDO71_RS00950 (LDO71_00950) tenA 213675..214349 (-) 675 WP_000899418.1 thiaminase II -
  LDO71_RS00955 (LDO71_00955) - 214612..215694 (+) 1083 WP_000680213.1 DUF475 domain-containing protein -
  LDO71_RS00960 (LDO71_00960) - 215841..217205 (+) 1365 WP_000980460.1 MFS transporter -
  LDO71_RS00965 (LDO71_00965) ssb 217257..217838 (+) 582 WP_001215080.1 single-stranded DNA-binding protein Machinery gene
  LDO71_RS00970 (LDO71_00970) - 217994..219220 (+) 1227 WP_071210167.1 site-specific integrase -
  LDO71_RS00975 (LDO71_00975) - 219213..220769 (+) 1557 WP_071210166.1 site-specific integrase -

Sequence

Protein


Download         Length: 193 a.a.        Molecular weight: 20978.80 Da        Isoelectric Point: 6.4822

>NTDB_id=610456 LDO71_RS00965 WP_001215080.1 217257..217838(+) (ssb) [Acinetobacter baumannii strain LHC22-2]
MRGVNKVILVGTLGRDPETKTFPNGGSLTQFSIATSEVWTDKNTGERKEQTEWHRIVLHNRLGEIAQQFLRKGSKVYIEG
SLRTRQWTDQNGQERYTTEIRGDQMQMLDARQQGEQGFAGGNDFNQPRFNAPQQGGGYQNNNQGGGYGQNNGGYGGQGGF
GNGGNSPQGGGFAPKAPQQPASAPADLDDDLPF

Nucleotide


Download         Length: 582 bp        

>NTDB_id=610456 LDO71_RS00965 WP_001215080.1 217257..217838(+) (ssb) [Acinetobacter baumannii strain LHC22-2]
ATGCGTGGTGTAAATAAGGTTATTTTGGTTGGTACTTTGGGTCGTGATCCTGAAACAAAAACTTTTCCAAATGGGGGCTC
GTTGACCCAGTTTTCTATCGCAACAAGTGAAGTTTGGACCGATAAAAATACAGGTGAACGTAAAGAACAAACAGAATGGC
ACCGTATTGTTTTGCATAACCGTTTAGGGGAAATTGCTCAGCAGTTTTTACGTAAAGGTTCTAAAGTTTATATCGAAGGT
TCATTACGTACACGTCAGTGGACAGACCAAAACGGTCAAGAACGTTACACTACAGAAATCCGTGGCGACCAGATGCAAAT
GTTAGATGCTCGTCAACAAGGCGAACAAGGTTTTGCTGGCGGTAATGATTTTAACCAACCACGTTTTAACGCGCCTCAAC
AAGGTGGCGGCTATCAAAATAACAACCAAGGTGGTGGCTACGGCCAAAACAATGGTGGTTATGGTGGCCAAGGTGGTTTC
GGTAATGGGGGCAATAGCCCGCAAGGTGGTGGTTTCGCTCCTAAAGCGCCACAACAACCAGCATCTGCACCAGCTGATTT
AGACGACGATTTACCGTTCTGA

Domains

Predicted by InterproScan.

Single-strand binding protein family (SSB)

(4-108)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB A0A009T283

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  ssb Glaesserella parasuis strain SC1401

51.5

100

0.534
  ssb Vibrio cholerae strain A1552

43.564

100

0.456
  ssb Neisseria meningitidis MC58

38.579

100

0.394
  ssb Neisseria gonorrhoeae MS11

38.579

100

0.394