Detailed information    

insolico Bioinformatically predicted

Overview

Name   ssb   Type   Machinery gene
Locus tag   LDZ27_RS13045 Genome accession   NZ_CP084265
Coordinates   2792352..2792885 (-) Length   177 a.a.
NCBI ID   WP_244814487.1    Uniprot ID   -
Organism   Caballeronia sp. Lep1P3     
Function   ssDNA binding (predicted from homology)   
DNA processing

Genomic Context

Location: 2787352..2797885
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  LDZ27_RS13030 - 2789722..2790372 (-) 651 WP_244814484.1 response regulator transcription factor -
  LDZ27_RS13035 - 2790473..2791153 (-) 681 WP_244814485.1 response regulator transcription factor -
  LDZ27_RS13040 - 2791275..2791904 (-) 630 WP_244814486.1 response regulator transcription factor -
  LDZ27_RS13045 ssb 2792352..2792885 (-) 534 WP_244814487.1 single-stranded DNA-binding protein Machinery gene
  LDZ27_RS13050 - 2793005..2794207 (-) 1203 WP_244814488.1 MFS transporter -
  LDZ27_RS13055 uvrA 2794446..2797319 (+) 2874 WP_244814489.1 excinuclease ABC subunit UvrA -

Sequence

Protein


Download         Length: 177 a.a.        Molecular weight: 18397.27 Da        Isoelectric Point: 5.9554

>NTDB_id=610380 LDZ27_RS13045 WP_244814487.1 2792352..2792885(-) (ssb) [Caballeronia sp. Lep1P3]
MASVNKVILVGNLGADPETRYLPSGDAVANIRLATTDRYKDKASGEMKELTEWHRVAFFGRLAEIVNEYLKKGSSVYIEG
RIRTRKWTDQAGQERYSTEIVADQMQMLGGRGGAGAGDDGGYSRSAPMDRSGGGSRAPSGAVGGRAGGSGGGSGGGSSRP
SAPAGGGFDDMDDDIPF

Nucleotide


Download         Length: 534 bp        

>NTDB_id=610380 LDZ27_RS13045 WP_244814487.1 2792352..2792885(-) (ssb) [Caballeronia sp. Lep1P3]
ATGGCATCTGTCAACAAGGTCATTCTCGTAGGCAATCTGGGCGCTGACCCGGAAACGCGCTACCTTCCGAGCGGCGACGC
CGTGGCCAACATTCGTCTCGCGACGACCGACCGCTACAAGGACAAGGCGTCCGGCGAAATGAAGGAGCTCACGGAATGGC
ATCGCGTCGCGTTCTTCGGGCGTCTCGCGGAAATCGTCAACGAGTATCTGAAGAAAGGGTCGTCGGTGTATATCGAAGGG
CGAATCCGCACGCGCAAGTGGACCGATCAAGCGGGCCAGGAGCGTTATTCGACGGAAATCGTCGCTGACCAGATGCAAAT
GCTGGGCGGCCGCGGCGGTGCGGGCGCCGGCGACGACGGCGGCTACAGCCGCAGCGCACCGATGGATCGTTCCGGCGGCG
GCAGCCGCGCCCCGTCGGGCGCGGTCGGCGGACGCGCAGGCGGATCGGGCGGCGGTTCGGGCGGCGGCAGCAGCCGGCCG
AGCGCGCCGGCGGGCGGCGGCTTCGACGACATGGACGACGATATTCCGTTCTGA

Domains

Predicted by InterproScan.

Single-strand binding protein family (SSB)

(4-108)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  ssb Vibrio cholerae strain A1552

49.198

100

0.52
  ssb Glaesserella parasuis strain SC1401

46.111

100

0.469
  ssb Neisseria gonorrhoeae MS11

43.82

100

0.441
  ssb Neisseria meningitidis MC58

43.575

100

0.441