Detailed information    

insolico Bioinformatically predicted

Overview

Name   ssb   Type   Machinery gene
Locus tag   LDL57_RS13300 Genome accession   NZ_CP084222
Coordinates   2804206..2804751 (-) Length   181 a.a.
NCBI ID   WP_180559501.1    Uniprot ID   -
Organism   Arsenophonus apicola strain ArsBeeUS     
Function   ssDNA binding (predicted from homology)   
DNA processing

Genomic Context

Location: 2799206..2809751
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  LDL57_RS13280 (LDL57_13280) - 2799663..2800664 (-) 1002 WP_180559505.1 agmatine/peptidylarginine deiminase -
  LDL57_RS13285 (LDL57_13285) - 2800819..2801415 (+) 597 WP_180559504.1 TetR/AcrR family transcriptional regulator -
  LDL57_RS13290 (LDL57_13290) - 2802011..2802244 (-) 234 WP_202881804.1 retron Se72 family effector protein -
  LDL57_RS13295 (LDL57_13295) - 2802237..2803403 (-) 1167 WP_225505923.1 reverse transcriptase family protein -
  LDL57_RS13300 (LDL57_13300) ssb 2804206..2804751 (-) 546 WP_180559501.1 single-stranded DNA-binding protein Machinery gene
  LDL57_RS13305 (LDL57_13305) uvrA 2805030..2807864 (+) 2835 WP_180559500.1 excinuclease ABC subunit UvrA -
  LDL57_RS13310 (LDL57_13310) - 2808373..2808858 (+) 486 WP_180559499.1 phenolic acid decarboxylase -

Sequence

Protein


Download         Length: 181 a.a.        Molecular weight: 19559.68 Da        Isoelectric Point: 5.2420

>NTDB_id=610177 LDL57_RS13300 WP_180559501.1 2804206..2804751(-) (ssb) [Arsenophonus apicola strain ArsBeeUS]
MASRGVNKVILIGNLGQDPEIRYMPNGGAVANLTLATSESWRDKQSGEMREKTEWHRVVIFGKLAEVAGEYLRKGSQVYI
EGSLQTRKWQDQNGQDRYSTEVVVNIGGTMQMLGARGGSQEGMSQNNPASGWGQPQQPQQPQASQQFSGNAPASAPAAHS
GKTAPATPAEPPMDFDDDIPF

Nucleotide


Download         Length: 546 bp        

>NTDB_id=610177 LDL57_RS13300 WP_180559501.1 2804206..2804751(-) (ssb) [Arsenophonus apicola strain ArsBeeUS]
ATGGCCAGCAGAGGCGTTAACAAAGTCATACTTATCGGCAACTTGGGACAAGATCCTGAAATTCGTTATATGCCAAATGG
TGGTGCGGTTGCGAATCTTACGCTGGCCACCTCTGAAAGTTGGCGTGATAAGCAAAGTGGCGAAATGCGGGAAAAAACAG
AATGGCACCGTGTTGTGATCTTTGGCAAGCTGGCGGAAGTGGCAGGTGAATATTTACGTAAAGGTTCACAAGTTTATATT
GAAGGCTCACTACAAACCCGTAAATGGCAAGATCAAAATGGCCAGGATCGCTACTCTACCGAAGTGGTGGTGAATATTGG
TGGAACCATGCAAATGTTAGGGGCGCGTGGTGGCTCACAAGAGGGTATGTCACAAAATAATCCAGCCAGTGGCTGGGGAC
AACCACAACAACCGCAACAGCCACAAGCAAGCCAGCAGTTTAGTGGTAACGCGCCAGCATCAGCGCCAGCTGCCCATTCC
GGTAAAACCGCTCCCGCGACACCGGCTGAACCACCAATGGATTTTGATGATGATATTCCGTTTTGA

Domains

Predicted by InterproScan.

Single-strand binding protein family (SSB)

(6-112)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  ssb Vibrio cholerae strain A1552

68.617

100

0.713
  ssb Glaesserella parasuis strain SC1401

56.915

100

0.591
  ssb Neisseria meningitidis MC58

47.514

100

0.475
  ssb Neisseria gonorrhoeae MS11

47.514

100

0.475