Detailed information    

insolico Bioinformatically predicted

Overview

Name   ssb   Type   Machinery gene
Locus tag   LDB27_RS20405 Genome accession   NZ_CP084216
Coordinates   4199298..4199828 (-) Length   176 a.a.
NCBI ID   WP_000168322.1    Uniprot ID   -
Organism   Salmonella sp. JXY0409-18     
Function   ssDNA binding (predicted from homology)   
DNA processing

Genomic Context

Location: 4194298..4204828
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  LDB27_RS20390 (LDB27_20390) siiC 4194932..4196251 (-) 1320 WP_225519893.1 SPI-4 type I secretion system protein SiiC -
  LDB27_RS20395 (LDB27_20395) - 4196241..4197629 (-) 1389 WP_000875200.1 MotA/TolQ/ExbB proton channel family protein -
  LDB27_RS20400 (LDB27_20400) siiA 4197626..4198258 (-) 633 WP_000389240.1 SPI-4 type I secretion system auxiliary protein SiiA -
  LDB27_RS20405 (LDB27_20405) ssb 4199298..4199828 (-) 531 WP_000168322.1 single-stranded DNA-binding protein SSB1 Machinery gene
  LDB27_RS20410 (LDB27_20410) uvrA 4200076..4202901 (+) 2826 WP_000357713.1 excinuclease ABC subunit UvrA -
  LDB27_RS20415 (LDB27_20415) - 4203033..4203488 (+) 456 WP_000432213.1 hypothetical protein -
  LDB27_RS20420 (LDB27_20420) - 4203475..4203813 (+) 339 WP_000146585.1 hypothetical protein -
  LDB27_RS20425 (LDB27_20425) - 4203814..4204170 (-) 357 WP_000155665.1 MmcQ/YjbR family DNA-binding protein -
  LDB27_RS20430 (LDB27_20430) - 4204173..4204589 (-) 417 WP_000270392.1 secondary thiamine-phosphate synthase enzyme YjbQ -

Sequence

Protein


Download         Length: 176 a.a.        Molecular weight: 19074.15 Da        Isoelectric Point: 5.2456

>NTDB_id=610144 LDB27_RS20405 WP_000168322.1 4199298..4199828(-) (ssb) [Salmonella sp. JXY0409-18]
MASRGVNKVILVGNLGQDPEVRYMPSGGAVANLTLATSESWRDKQTGEMKEQTEWHRVVMFGKLAEVAGEYLRKGSQVYI
EGQLRTRKWTDQSGQERYTTEINVPQIGGVMQMLGGRQGGGAPAGGQQQGGWGQPQQPQQPQGGNQFSGGAQSRPQQSAP
APSNEPPMDFDDDIPF

Nucleotide


Download         Length: 531 bp        

>NTDB_id=610144 LDB27_RS20405 WP_000168322.1 4199298..4199828(-) (ssb) [Salmonella sp. JXY0409-18]
ATGGCCAGCAGAGGCGTAAACAAGGTGATTCTCGTTGGTAATCTGGGCCAGGACCCGGAAGTACGCTATATGCCGAGTGG
CGGCGCTGTCGCCAACTTAACGCTGGCTACTTCTGAATCCTGGCGCGATAAGCAGACCGGCGAAATGAAAGAGCAGACTG
AATGGCACCGGGTGGTGATGTTCGGCAAACTGGCGGAAGTGGCCGGCGAATATCTGCGTAAAGGTTCTCAGGTGTATATC
GAAGGTCAATTGCGTACCCGCAAGTGGACCGATCAGAGTGGCCAGGAACGCTATACGACTGAAATTAACGTTCCGCAGAT
CGGCGGCGTGATGCAGATGCTGGGTGGTCGTCAGGGCGGCGGCGCACCGGCAGGCGGTCAGCAGCAGGGGGGTTGGGGTC
AACCGCAACAACCTCAGCAGCCACAGGGCGGCAACCAGTTCAGCGGCGGCGCGCAGTCGCGTCCACAGCAATCCGCGCCA
GCGCCGTCTAACGAACCGCCAATGGATTTTGACGACGACATTCCGTTCTGA

Domains

Predicted by InterproScan.

Single-strand binding protein family (SSB)

(6-107)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  ssb Vibrio cholerae strain A1552

71.978

100

0.744
  ssb Glaesserella parasuis strain SC1401

60.109

100

0.625
  ssb Neisseria gonorrhoeae MS11

46.448

100

0.483
  ssb Neisseria meningitidis MC58

46.409

100

0.477