Detailed information    

insolico Bioinformatically predicted

Overview

Name   ssb   Type   Machinery gene
Locus tag   LDB16_RS20535 Genome accession   NZ_CP084209
Coordinates   4208904..4209440 (-) Length   178 a.a.
NCBI ID   WP_000168305.1    Uniprot ID   A0A9P2PPK2
Organism   Escherichia coli strain EC2648-R2     
Function   ssDNA binding (predicted from homology)   
DNA processing

Genomic Context

Location: 4203904..4214440
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  LDB16_RS20515 (LDB16_20530) soxR 4205632..4206096 (-) 465 WP_000412428.1 redox-sensitive transcriptional activator SoxR -
  LDB16_RS20520 (LDB16_20535) soxS 4206182..4206505 (+) 324 WP_000019358.1 superoxide response transcriptional regulator SoxS -
  LDB16_RS20525 (LDB16_20540) pdeC 4206508..4208094 (-) 1587 WP_072647368.1 c-di-GMP phosphodiesterase PdeC -
  LDB16_RS20530 (LDB16_20545) yjcB 4208524..4208805 (+) 282 WP_001295689.1 YjcB family protein -
  LDB16_RS20535 (LDB16_20550) ssb 4208904..4209440 (-) 537 WP_000168305.1 single-stranded DNA-binding protein SSB1 Machinery gene
  LDB16_RS20540 (LDB16_20555) uvrA 4209694..4212516 (+) 2823 WP_000357740.1 excinuclease ABC subunit UvrA -
  LDB16_RS20545 (LDB16_20560) yjbR 4212551..4212907 (-) 357 WP_000155657.1 MmcQ/YjbR family DNA-binding protein -
  LDB16_RS20550 (LDB16_20565) yjbQ 4212911..4213327 (-) 417 WP_000270375.1 secondary thiamine-phosphate synthase enzyme YjbQ -
  LDB16_RS20555 (LDB16_20570) aphA 4213438..4214151 (-) 714 WP_001226928.1 acid phosphatase AphA -

Sequence

Protein


Download         Length: 178 a.a.        Molecular weight: 18975.00 Da        Isoelectric Point: 5.2358

>NTDB_id=610092 LDB16_RS20535 WP_000168305.1 4208904..4209440(-) (ssb) [Escherichia coli strain EC2648-R2]
MASRGVNKVILVGNLGQDPEVRYMPNGGAVANITLATSESWRDKATGEMKEQTEWHRVVLFGKLAEVASEYLRKGSQVYI
EGQLRTRKWTDQSGQDRYTTEVVVNVGGTMQMLGGRQGGGAPAGGNIGGGQPQGGWGQPQQPQGGNQFSGGAQSRPQQSA
PAAPSNEPPMDFDDDIPF

Nucleotide


Download         Length: 537 bp        

>NTDB_id=610092 LDB16_RS20535 WP_000168305.1 4208904..4209440(-) (ssb) [Escherichia coli strain EC2648-R2]
ATGGCCAGCAGAGGCGTAAACAAGGTTATTCTCGTTGGTAATCTGGGTCAGGACCCGGAAGTACGCTACATGCCAAATGG
TGGCGCAGTTGCCAACATTACGCTGGCTACTTCCGAATCCTGGCGTGATAAAGCGACCGGCGAGATGAAAGAACAGACTG
AATGGCACCGCGTTGTGCTGTTCGGCAAACTGGCAGAAGTGGCGAGCGAATATCTGCGTAAAGGTTCTCAGGTTTATATC
GAAGGTCAGCTGCGTACCCGTAAATGGACCGATCAATCCGGTCAGGATCGCTACACCACAGAAGTCGTGGTGAACGTTGG
CGGCACCATGCAGATGCTGGGTGGTCGTCAGGGTGGTGGCGCTCCGGCAGGTGGCAATATCGGTGGTGGTCAGCCGCAGG
GCGGTTGGGGTCAGCCTCAGCAGCCGCAGGGTGGCAATCAGTTCAGCGGCGGCGCGCAGTCTCGCCCGCAGCAGTCCGCT
CCGGCAGCGCCGTCTAACGAGCCGCCGATGGACTTTGATGATGACATTCCGTTCTGA

Domains

Predicted by InterproScan.

Single-strand binding protein family (SSB)

(6-112)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  ssb Vibrio cholerae strain A1552

74.444

100

0.753
  ssb Glaesserella parasuis strain SC1401

57.923

100

0.596
  ssb Neisseria meningitidis MC58

48.066

100

0.489
  ssb Neisseria gonorrhoeae MS11

48.066

100

0.489