Detailed information    

insolico Bioinformatically predicted

Overview

Name   rarA   Type   Machinery gene
Locus tag   EL277_RS08985 Genome accession   NZ_AP018936
Coordinates   1708598..1709869 (+) Length   423 a.a.
NCBI ID   WP_001113209.1    Uniprot ID   -
Organism   Streptococcus pneumoniae strain NU83127     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 1703598..1714869
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  EL277_RS08940 (SPNU_1696) - 1704663..1705091 (-) 429 WP_000401988.1 NUDIX hydrolase -
  EL277_RS08945 (SPNU_1697) - 1705093..1706160 (-) 1068 WP_061364929.1 site-2 protease family protein -
  EL277_RS08950 (SPNU_1698) - 1706179..1706649 (-) 471 WP_000257084.1 DUF3013 family protein -
  EL277_RS08955 (SPNU_1699) - 1706940..1707392 (-) 453 WP_000961810.1 type II toxin-antitoxin system HicB family antitoxin -
  EL277_RS08960 - 1707429..1707608 (-) 180 WP_025169096.1 type II toxin-antitoxin system HicA family toxin -
  EL277_RS08965 - 1707745..1707924 (-) 180 WP_001809903.1 hypothetical protein -
  EL277_RS08975 (SPNU_1700) - 1708089..1708328 (-) 240 WP_000818078.1 hypothetical protein -
  EL277_RS08985 (SPNU_1701) rarA 1708598..1709869 (+) 1272 WP_001113209.1 replication-associated recombination protein A Machinery gene
  EL277_RS08995 (SPNU_1703) - 1710288..1711415 (-) 1128 WP_126443150.1 tyrosine-type recombinase/integrase -
  EL277_RS09000 (SPNU_1704) - 1711415..1711597 (-) 183 WP_061590400.1 DUF3173 domain-containing protein -
  EL277_RS09005 (SPNU_1705) - 1711601..1712620 (-) 1020 WP_126443147.1 replication initiation factor domain-containing protein -
  EL277_RS09010 (SPNU_1706) - 1712633..1713049 (-) 417 WP_126443145.1 hypothetical protein -
  EL277_RS12005 (SPNU_1708) - 1713491..1713628 (-) 138 WP_001002894.1 hypothetical protein -

Sequence

Protein


Download         Length: 423 a.a.        Molecular weight: 47011.47 Da        Isoelectric Point: 5.9471

>NTDB_id=61009 EL277_RS08985 WP_001113209.1 1708598..1709869(+) (rarA) [Streptococcus pneumoniae strain NU83127]
MPDNLALRMRPKTIDQVIGQEHLVGPGKIIRRMVEANRLSSMILYGPPGIGKTSIASAIAGTTKYAFRTFNATVDSKKRL
QEISEEAKFSGGLVLLLDEIHRLDKTKQDFLLPLLESGLVIMIGATTENPFFSVTPAIRSRVQIFELEPLSNQDVKEALQ
IALSNPERGFDFPIELDEDALDFIATSTNGDLRSAFNSLDLAVLSTPENDEGIRHITLDIMENSLQRSYITMDKDGDGHY
DVLSALQKSIRGSDVDASLHYAARLIEAGDLPSLARRLTVIAYEDIGLANPEAQIHTVTALDAAQRIGFPEARILIANVV
IDLALSPKSNSAYVAMDKALADLKTSGHLPIPRHLRDGHYSGSKELGNAQDYLYPHNYPGNWIKQDYLPEKIRNHHYFQA
EDTGKYERALAQRKEAIDRLRKI

Nucleotide


Download         Length: 1272 bp        

>NTDB_id=61009 EL277_RS08985 WP_001113209.1 1708598..1709869(+) (rarA) [Streptococcus pneumoniae strain NU83127]
ATGCCAGACAATCTCGCGCTTCGCATGCGCCCTAAAACCATCGACCAGGTCATCGGTCAGGAGCATCTGGTCGGACCTGG
AAAAATCATCCGCCGCATGGTGGAAGCCAACCGCCTGTCCTCCATGATTCTATATGGCCCTCCTGGAATCGGCAAAACCA
GTATTGCCTCTGCCATCGCTGGAACGACCAAGTATGCCTTTCGAACTTTCAATGCGACAGTTGATAGTAAAAAGCGACTG
CAAGAAATCTCGGAAGAAGCTAAATTTTCTGGTGGTCTCGTCCTATTGCTAGACGAAATTCATCGACTAGATAAGACCAA
GCAAGACTTCCTCTTGCCTCTCTTGGAAAGTGGACTGGTCATCATGATTGGAGCAACGACTGAAAATCCTTTCTTCTCTG
TCACTCCTGCCATTCGTAGCCGTGTTCAAATTTTCGAGTTGGAACCTCTGTCTAACCAAGACGTCAAAGAGGCCCTGCAG
ATAGCTCTAAGTAACCCTGAACGTGGTTTTGATTTTCCAATAGAACTAGATGAGGATGCGCTGGATTTCATCGCAACCTC
TACAAACGGAGACCTTCGCTCTGCCTTTAACTCACTGGACTTGGCTGTTCTCTCTACCCCTGAGAATGACGAGGGCATTC
GCCACATCACCTTAGACATCATGGAAAATAGTCTTCAGAGAAGCTACATCACTATGGACAAGGATGGAGACGGTCACTAT
GATGTTCTATCTGCCCTGCAAAAGTCTATCCGTGGCTCAGATGTGGATGCCAGTCTCCACTATGCTGCCCGCTTGATTGA
GGCTGGGGATCTGCCTAGTCTCGCTCGTCGCTTGACTGTTATCGCCTATGAAGATATTGGCTTAGCCAATCCTGAGGCCC
AGATTCATACCGTGACTGCTCTGGATGCTGCACAAAGGATTGGTTTCCCCGAAGCCCGCATTCTCATTGCCAATGTCGTG
ATTGATTTGGCCCTTTCTCCAAAATCCAACTCAGCCTATGTAGCTATGGATAAGGCACTTGCTGACCTCAAAACATCAGG
GCACTTGCCTATTCCGCGACACCTGCGTGATGGGCACTACAGTGGAAGCAAGGAACTGGGGAATGCCCAAGACTATCTCT
ATCCACACAACTATCCTGGAAATTGGATCAAGCAAGACTATCTGCCAGAAAAAATTCGTAATCATCACTATTTCCAAGCA
GAAGATACTGGTAAATATGAACGGGCTTTGGCTCAAAGAAAGGAAGCTATCGATCGTTTGCGAAAAATCTGA

Domains

Predicted by InterProScan.

MgsA AAA+ ATPase C terminal (MgsA_C)

(252-416)

ATPase family associated with various cellular activities (AAA) (AAA)

(42-144)

AAA C-terminal domain (AAA_assoc_2)

(173-251)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  rarA Bacillus subtilis subsp. subtilis str. 168

57.518

99.054

0.57

Multiple sequence alignment