Detailed information    

insolico Bioinformatically predicted

Overview

Name   comA   Type   Regulator
Locus tag   RBAU_RS15325 Genome accession   NC_022075
Coordinates   3144440..3145084 (-) Length   214 a.a.
NCBI ID   WP_003152052.1    Uniprot ID   A3KLB8
Organism   Bacillus velezensis UCMB5033     
Function   promoting transcription of comS (predicted from homology)   
Competence regulation

Genomic Context

Location: 3139440..3150084
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  RBAU_RS15290 (RBAU_2999) - 3140625..3141056 (+) 432 WP_007408670.1 Na(+)/H(+) antiporter subunit B -
  RBAU_RS15295 (RBAU_3000) - 3141056..3141397 (+) 342 WP_003152063.1 Na(+)/H(+) antiporter subunit C -
  RBAU_RS15300 (RBAU_3001) - 3141390..3142871 (+) 1482 WP_007408671.1 Na+/H+ antiporter subunit D -
  RBAU_RS15305 (RBAU_3002) - 3142877..3143353 (+) 477 WP_007408672.1 Na+/H+ antiporter subunit E -
  RBAU_RS15310 (RBAU_3003) - 3143353..3143637 (+) 285 WP_007408673.1 Na(+)/H(+) antiporter subunit F1 -
  RBAU_RS15315 (RBAU_3004) mnhG 3143621..3143995 (+) 375 WP_003152056.1 monovalent cation/H(+) antiporter subunit G -
  RBAU_RS15320 (RBAU_3005) - 3144035..3144418 (-) 384 WP_007408674.1 hotdog fold thioesterase -
  RBAU_RS15325 (RBAU_3006) comA 3144440..3145084 (-) 645 WP_003152052.1 response regulator transcription factor Regulator
  RBAU_RS15330 (RBAU_3007) comP 3145165..3147474 (-) 2310 WP_020954299.1 histidine kinase Regulator
  RBAU_RS15335 (RBAU_3008) comX 3147494..3147670 (-) 177 WP_007408675.1 competence pheromone ComX -
  RBAU_RS15340 (RBAU_3009) comQ 3147670..3148608 (-) 939 WP_020954300.1 polyprenyl synthetase family protein Regulator
  RBAU_RS15345 (RBAU_3010) degQ 3148739..3148879 (-) 141 WP_003152043.1 degradation enzyme regulation protein DegQ Regulator
  RBAU_RS15350 (RBAU_3011) - 3149345..3149686 (+) 342 WP_007408677.1 hypothetical protein -

Sequence

Protein


Download         Length: 214 a.a.        Molecular weight: 24271.68 Da        Isoelectric Point: 4.9953

>NTDB_id=61006 RBAU_RS15325 WP_003152052.1 3144440..3145084(-) (comA) [Bacillus velezensis UCMB5033]
MKKILVIDDHPAVMEGTKTILETDTNLSVDCLSPDASEQFVLRHDFSAYDLILMDLNLGDDISGIELSKKILKENPLCKI
IVYTGYEVEDYFEESIRAGLHGAISKTESKEKIMQYIYHVLNGQILVDFSYFKQLMTQQKTKTSSSPQSEQDRLTPRERH
ILQEVEKGLTNQEIADALHLSKRSIEYSLTSIFNKLNVGSRTEAVLIAKSDNVL

Nucleotide


Download         Length: 645 bp        

>NTDB_id=61006 RBAU_RS15325 WP_003152052.1 3144440..3145084(-) (comA) [Bacillus velezensis UCMB5033]
ATGAAAAAGATACTAGTGATTGATGATCATCCGGCTGTCATGGAGGGCACCAAGACGATTCTGGAAACGGACACGAATCT
TTCTGTCGATTGCCTCAGTCCTGATGCCAGTGAACAATTCGTTCTCCGGCATGATTTTTCAGCTTACGATCTCATATTAA
TGGATTTAAATCTGGGTGATGACATCAGCGGCATAGAGCTTTCTAAGAAAATCTTAAAAGAGAATCCTCTCTGTAAAATC
ATTGTCTACACAGGCTATGAGGTTGAAGATTATTTTGAAGAATCCATCCGCGCGGGCCTGCATGGCGCCATCAGCAAAAC
CGAATCTAAAGAGAAAATCATGCAATACATATATCACGTGCTCAACGGACAGATTTTAGTTGATTTCTCCTATTTCAAAC
AGCTGATGACCCAGCAAAAAACAAAAACGTCTTCTTCCCCTCAAAGTGAGCAGGATCGGTTAACCCCGAGAGAGCGCCAT
ATTCTCCAAGAGGTCGAAAAAGGTTTGACCAATCAGGAAATCGCAGATGCGCTTCACTTAAGCAAGCGGTCAATTGAATA
CAGCCTGACATCCATTTTTAACAAGCTGAATGTCGGCTCCCGAACTGAAGCGGTGCTGATCGCCAAGTCAGATAACGTAC
TATAA

Domains

Predicted by InterproScan.

Response regulator receiver domain (Response_reg)

(4-117)

Bacterial regulatory proteins, luxR family (GerE)

(153-208)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB A3KLB8

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comA Bacillus subtilis subsp. subtilis str. 168

86.449

100

0.864

Multiple sequence alignment