Detailed information    

insolico Bioinformatically predicted

Overview


Name   comQ   Type   Regulator
Locus tag   RBAU_RS15340 Genome accession   NC_022075
Coordinates   3147670..3148608 (-) Length   312 a.a.
NCBI ID   WP_020954300.1    Uniprot ID   -
Organism   Bacillus velezensis UCMB5033     
Function   modification of ComX; production of ComX (predicted from homology)   
Competence regulation

Genomic Context


Location: 3142670..3153608
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  RBAU_RS15305 (RBAU_3002) - 3142877..3143353 (+) 477 WP_007408672.1 Na+/H+ antiporter subunit E -
  RBAU_RS15310 (RBAU_3003) - 3143353..3143637 (+) 285 WP_007408673.1 Na(+)/H(+) antiporter subunit F1 -
  RBAU_RS15315 (RBAU_3004) mnhG 3143621..3143995 (+) 375 WP_003152056.1 monovalent cation/H(+) antiporter subunit G -
  RBAU_RS15320 (RBAU_3005) - 3144035..3144418 (-) 384 WP_007408674.1 hotdog fold thioesterase -
  RBAU_RS15325 (RBAU_3006) comA 3144440..3145084 (-) 645 WP_003152052.1 response regulator transcription factor Regulator
  RBAU_RS15330 (RBAU_3007) comP 3145165..3147474 (-) 2310 WP_020954299.1 histidine kinase Regulator
  RBAU_RS15335 (RBAU_3008) comX 3147494..3147670 (-) 177 WP_007408675.1 competence pheromone ComX -
  RBAU_RS15340 (RBAU_3009) comQ 3147670..3148608 (-) 939 WP_020954300.1 polyprenyl synthetase family protein Regulator
  RBAU_RS15345 (RBAU_3010) degQ 3148739..3148879 (-) 141 WP_003152043.1 degradation enzyme regulation protein DegQ Regulator
  RBAU_RS15350 (RBAU_3011) - 3149345..3149686 (+) 342 WP_007408677.1 hypothetical protein -
  RBAU_RS15355 (RBAU_3012) - 3149693..3150916 (-) 1224 WP_007408678.1 EAL and HDOD domain-containing protein -
  RBAU_RS15360 (RBAU_3013) - 3151046..3152512 (-) 1467 WP_020954301.1 nicotinate phosphoribosyltransferase -
  RBAU_RS15365 (RBAU_3014) - 3152530..3153081 (-) 552 WP_003152033.1 isochorismatase family cysteine hydrolase -
  RBAU_RS15370 (RBAU_3015) - 3153178..3153576 (-) 399 WP_003152031.1 DUF1694 domain-containing protein -

Sequence


Protein


Download         Length: 312 a.a.        Molecular weight: 35893.29 Da        Isoelectric Point: 6.3951

>NTDB_id=61008 RBAU_RS15340 WP_020954300.1 3147670..3148608(-) (comQ) [Bacillus velezensis UCMB5033]
MKTIIEQMCLDANQIKNKMKSIIEQNIFNQHLLQLLLGFVESRKYLTFAESALLHYEVFGGRDFKTAEKLAAGIEILTLS
ADIIDDLEDEDNKQALWMKIDRSEALSAAFSLYTAGLQGINSINMNPFILSYILKYTQDAMQGQHDDIINKPEKEDESLE
VIRLKCGSLFALSNVAGTMLATGKYNETVETYSYYKGMFEQIYSDYLALFSSKRSDILKDKHTLINLYLKRLFNEPSEKL
VRMFSHRETHLKFISDKNNFIQTLTDAGVTQYVSVLHQLYKQKCENAIEKLNLETSKIDKLKKYVVNRGIEV

Nucleotide


Download         Length: 939 bp        

>NTDB_id=61008 RBAU_RS15340 WP_020954300.1 3147670..3148608(-) (comQ) [Bacillus velezensis UCMB5033]
GTGAAGACAATTATTGAGCAAATGTGTTTAGATGCCAACCAAATCAAGAATAAAATGAAGAGTATAATAGAGCAAAACAT
ATTTAATCAACATTTACTACAGCTTCTTCTTGGGTTTGTTGAATCCAGAAAATATTTAACCTTTGCTGAATCTGCTTTAT
TGCATTATGAAGTTTTTGGCGGAAGGGATTTTAAGACTGCTGAGAAACTTGCGGCGGGAATTGAAATTCTTACGCTTTCC
GCCGATATTATTGATGATCTTGAAGATGAAGATAACAAACAAGCTCTTTGGATGAAGATAGACCGTTCAGAAGCTTTAAG
CGCAGCTTTTTCATTATACACAGCAGGGCTGCAGGGGATTAATTCAATTAACATGAATCCTTTTATTCTTTCTTACATAC
TGAAATATACACAAGACGCTATGCAAGGACAACACGATGATATAATCAATAAGCCAGAGAAAGAAGATGAAAGTTTAGAG
GTCATTAGATTAAAATGCGGGAGTCTATTCGCTCTATCCAATGTGGCAGGTACTATGTTAGCAACTGGAAAGTATAATGA
AACTGTTGAAACGTATTCCTATTACAAAGGAATGTTTGAACAGATATATAGTGATTATCTGGCTCTTTTCAGCTCTAAAC
GCAGTGATATTTTAAAAGATAAACACACGTTAATCAACTTGTACCTTAAGAGGCTGTTTAACGAGCCTTCTGAAAAATTG
GTTCGTATGTTTTCTCATAGAGAAACACACCTTAAGTTTATATCTGATAAAAACAATTTTATTCAGACATTAACTGATGC
AGGTGTTACTCAGTATGTTTCAGTTTTACACCAATTGTATAAGCAAAAATGTGAAAATGCTATAGAGAAACTAAATCTTG
AAACCAGTAAAATAGATAAATTGAAAAAATATGTAGTTAATAGGGGGATTGAAGTATAA

Domains


Predicted by InterproScan.

(53-247)


Secondary structure


Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure


Source ID Structure

Transmembrane helices


Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.



Visualization of predicted probability:


Similar proteins


Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comQ Bacillus subtilis subsp. subtilis str. 168

62.456

91.346

0.571


Multiple sequence alignment