Detailed information    

insolico Bioinformatically predicted

Overview

Name   ssb   Type   Machinery gene
Locus tag   NML18_RS21450 Genome accession   NZ_CP101269
Coordinates   4399299..4399835 (-) Length   178 a.a.
NCBI ID   WP_254837337.1    Uniprot ID   -
Organism   Escherichia coli strain EC21Z-048     
Function   ssDNA binding (predicted from homology)   
DNA processing

Genomic Context

Location: 4394299..4404835
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  NML18_RS21430 (NML18_21435) soxR 4396027..4396491 (-) 465 WP_000412428.1 redox-sensitive transcriptional activator SoxR -
  NML18_RS21435 (NML18_21440) soxS 4396577..4396900 (+) 324 WP_000019358.1 superoxide response transcriptional regulator SoxS -
  NML18_RS21440 (NML18_21445) pdeC 4396903..4398489 (-) 1587 WP_104725647.1 c-di-GMP phosphodiesterase PdeC -
  NML18_RS21445 (NML18_21450) yjcB 4398919..4399200 (+) 282 WP_001295689.1 YjcB family protein -
  NML18_RS21450 (NML18_21455) ssb 4399299..4399835 (-) 537 WP_254837337.1 single-stranded DNA-binding protein SSB1 Machinery gene
  NML18_RS21455 (NML18_21460) uvrA 4400089..4402911 (+) 2823 WP_000357740.1 excinuclease ABC subunit UvrA Machinery gene
  NML18_RS21460 (NML18_21465) yjbR 4402946..4403302 (-) 357 WP_000155655.1 MmcQ/YjbR family DNA-binding protein -
  NML18_RS21465 (NML18_21470) yjbQ 4403306..4403722 (-) 417 WP_000270372.1 secondary thiamine-phosphate synthase enzyme YjbQ -
  NML18_RS21470 (NML18_21475) aphA 4403833..4404546 (-) 714 WP_001226928.1 acid phosphatase AphA -

Sequence

Protein


Download         Length: 178 a.a.        Molecular weight: 18960.97 Da        Isoelectric Point: 5.2358

>NTDB_id=609836 NML18_RS21450 WP_254837337.1 4399299..4399835(-) (ssb) [Escherichia coli strain EC21Z-048]
MASRGVNKVILVGNLGQDPEVRYMPNGGAVANITLATSESWRDKATGEMKEQTEWHRVVVFGKLAEVASEYLRKGSQVYI
EGQLRTRKWTDQSGQDRYTTEVVVNVGGTMQMLGGRQGGGAPAGGNIGGGQPQGGWGQPQQPQGGNQFSGGAQSRPQQSA
PAAPSNEPPMDFDDDIPF

Nucleotide


Download         Length: 537 bp        

>NTDB_id=609836 NML18_RS21450 WP_254837337.1 4399299..4399835(-) (ssb) [Escherichia coli strain EC21Z-048]
ATGGCCAGCAGAGGCGTAAACAAGGTTATTCTCGTTGGTAATCTGGGTCAGGACCCGGAAGTACGCTACATGCCAAATGG
TGGCGCAGTTGCCAACATTACGCTGGCTACTTCCGAATCCTGGCGTGATAAAGCGACCGGCGAGATGAAAGAACAGACTG
AATGGCACCGCGTTGTGGTGTTCGGCAAACTGGCAGAAGTGGCGAGCGAATATCTGCGTAAAGGTTCTCAGGTTTATATC
GAAGGTCAGCTGCGTACCCGTAAATGGACCGATCAATCCGGTCAGGATCGCTACACCACAGAAGTCGTGGTGAACGTTGG
CGGCACCATGCAGATGCTGGGTGGTCGTCAGGGTGGTGGCGCTCCGGCAGGTGGCAATATCGGTGGTGGTCAGCCGCAGG
GCGGTTGGGGTCAGCCACAGCAGCCGCAGGGTGGCAATCAGTTCAGCGGCGGCGCGCAGTCTCGCCCGCAGCAGTCCGCT
CCGGCAGCGCCGTCTAACGAGCCGCCGATGGACTTTGATGATGACATTCCGTTCTGA

Domains

Predicted by InterProScan.

Single-strand binding protein family (SSB)

(6-112)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  ssb Vibrio cholerae strain A1552

73.889

100

0.747
  ssb Glaesserella parasuis strain SC1401

57.923

100

0.596
  ssb Neisseria meningitidis MC58

48.066

100

0.489
  ssb Neisseria gonorrhoeae MS11

48.066

100

0.489