Detailed information    

insolico Bioinformatically predicted

Overview

Name   ssb   Type   Machinery gene
Locus tag   LCW13_RS16455 Genome accession   NZ_CP084115
Coordinates   3942512..3943168 (-) Length   218 a.a.
NCBI ID   WP_225347411.1    Uniprot ID   -
Organism   Cobetia amphilecti strain N-80     
Function   ssDNA binding (predicted from homology)   
DNA processing

Genomic Context

Location: 3937512..3948168
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  LCW13_RS16440 (LCW13_16440) - 3937833..3938594 (-) 762 WP_225347408.1 1-acyl-sn-glycerol-3-phosphate acyltransferase -
  LCW13_RS16445 (LCW13_16445) - 3938613..3939497 (-) 885 WP_225347409.1 sugar nucleotide-binding protein -
  LCW13_RS16450 (LCW13_16450) - 3939560..3942067 (-) 2508 WP_225347410.1 bifunctional diguanylate cyclase/phosphodiesterase -
  LCW13_RS16455 (LCW13_16455) ssb 3942512..3943168 (-) 657 WP_225347411.1 single-stranded DNA-binding protein Machinery gene
  LCW13_RS16460 (LCW13_16460) - 3943256..3944671 (-) 1416 WP_054556904.1 MFS transporter -
  LCW13_RS16465 (LCW13_16465) uvrA 3944879..3947758 (+) 2880 WP_225347412.1 excinuclease ABC subunit UvrA -

Sequence

Protein


Download         Length: 218 a.a.        Molecular weight: 23546.51 Da        Isoelectric Point: 5.2339

>NTDB_id=609670 LCW13_RS16455 WP_225347411.1 3942512..3943168(-) (ssb) [Cobetia amphilecti strain N-80]
MARGVNKVILIGNLGQDPEVRFTPSGSAVCNLNLATTDTWNDRQSGQRQERTEWHRVVMFNKLAEVAQQYVKKGSRLYIE
GRLQTRKWQDQNGNDRYSTEIVANDMQMLDTRGEGGGGNFAGGRPQQAPQQGGQQPAAAPQQGGQFGGQQPAPQQGGQFG
GQQPAPQQGGQFGGQQSAPQQGNNFGGQQPAQQNNSQNNNFGAPPAGSFDDFDDEIPF

Nucleotide


Download         Length: 657 bp        

>NTDB_id=609670 LCW13_RS16455 WP_225347411.1 3942512..3943168(-) (ssb) [Cobetia amphilecti strain N-80]
ATGGCTCGTGGCGTAAACAAGGTCATTCTGATCGGTAATCTCGGTCAAGACCCGGAAGTTCGCTTCACCCCGTCCGGTAG
TGCGGTGTGCAACCTGAACCTCGCGACGACGGACACCTGGAATGATCGCCAGAGCGGTCAGCGTCAGGAACGTACCGAAT
GGCACCGTGTGGTGATGTTCAACAAGCTGGCTGAAGTGGCCCAGCAATACGTCAAGAAAGGCTCACGCCTGTATATCGAA
GGCCGCCTGCAGACGCGCAAGTGGCAGGATCAGAACGGCAATGACCGTTACAGCACCGAAATCGTGGCCAACGACATGCA
GATGCTGGATACGCGTGGTGAAGGTGGCGGCGGCAACTTCGCTGGTGGTCGCCCGCAGCAGGCGCCTCAGCAGGGCGGCC
AGCAACCGGCCGCAGCCCCCCAGCAGGGTGGCCAGTTCGGTGGTCAGCAGCCGGCCCCGCAGCAAGGTGGCCAGTTCGGT
GGTCAGCAGCCGGCCCCACAGCAAGGCGGTCAGTTCGGTGGTCAGCAGTCGGCCCCTCAGCAGGGCAACAACTTCGGTGG
CCAGCAGCCTGCCCAGCAGAACAACTCCCAGAACAACAATTTCGGTGCGCCGCCCGCGGGCAGCTTCGATGATTTCGATG
ATGAAATCCCGTTCTGA

Domains

Predicted by InterproScan.

Single-strand binding protein family (SSB)

(5-109)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  ssb Vibrio cholerae strain A1552

49.545

100

0.5
  ssb Glaesserella parasuis strain SC1401

44.545

100

0.45
  ssb Neisseria gonorrhoeae MS11

43.256

98.624

0.427
  ssb Neisseria meningitidis MC58

42.791

98.624

0.422