Detailed information    

insolico Bioinformatically predicted

Overview

Name   braR   Type   Regulator
Locus tag   LB316_RS13240 Genome accession   NZ_CP084107
Coordinates   2674556..2675221 (-) Length   221 a.a.
NCBI ID   WP_000697879.1    Uniprot ID   -
Organism   Staphylococcus aureus strain CC49/ST49-MSSA     
Function   promote expression of competence genes (predicted from homology)   
Competence regulation

Genomic Context

Location: 2669556..2680221
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  LB316_RS13220 (LB316_13215) - 2670015..2670128 (-) 114 WP_072468803.1 hypothetical protein -
  LB316_RS13225 (LB316_13220) - 2670798..2672798 (-) 2001 WP_000776724.1 ABC transporter permease -
  LB316_RS13230 (LB316_13225) - 2672795..2673550 (-) 756 WP_000923766.1 ABC transporter ATP-binding protein -
  LB316_RS13235 (LB316_13230) braS 2673658..2674545 (-) 888 WP_229375438.1 nisin susceptibility-associated two-component system sensor histidine kinase NsaS Regulator
  LB316_RS13240 (LB316_13235) braR 2674556..2675221 (-) 666 WP_000697879.1 nisin susceptibility-associated two-component system response regulator NsaR Regulator
  LB316_RS13245 (LB316_13240) - 2675247..2675447 (-) 201 WP_000604729.1 hypothetical protein -
  LB316_RS13250 (LB316_13245) - 2675645..2677069 (+) 1425 WP_000948999.1 alkaline phosphatase -
  LB316_RS13255 (LB316_13250) - 2677139..2677249 (+) 111 WP_001791296.1 hypothetical protein -
  LB316_RS13260 (LB316_13255) - 2677352..2677807 (-) 456 WP_000106183.1 MarR family winged helix-turn-helix transcriptional regulator -
  LB316_RS13265 (LB316_13260) - 2678053..2678814 (-) 762 WP_000323444.1 alpha/beta hydrolase family protein -

Sequence

Protein


Download         Length: 221 a.a.        Molecular weight: 25388.46 Da        Isoelectric Point: 4.7961

>NTDB_id=609598 LB316_RS13240 WP_000697879.1 2674556..2675221(-) (braR) [Staphylococcus aureus strain CC49/ST49-MSSA]
MKILIVEDDFVIAESLASELKKWNYGVIVVEQFDDILSIFNQHQPQLVLLDINLPTLNGFHWCQEIRKTSNVPIIFISSR
IDNMDQIMAIQMGGDDFIEKPFNLSLTIAKIQALLRRTYDLSVANDSLTVKGCTLILDEAKVVYQEQSIQLSLTELQILK
LLFQNEDKYVSRTALIEKCWESENFIDDNTLAVNMTRLRKKLNTIGVNDFIITKKNVGYKV

Nucleotide


Download         Length: 666 bp        

>NTDB_id=609598 LB316_RS13240 WP_000697879.1 2674556..2675221(-) (braR) [Staphylococcus aureus strain CC49/ST49-MSSA]
ATGAAAATATTAATTGTTGAAGATGATTTTGTTATAGCAGAAAGTTTAGCATCTGAACTTAAAAAATGGAATTACGGTGT
TATTGTCGTTGAACAATTTGATGATATACTGTCTATCTTTAACCAACATCAACCTCAGCTTGTATTGCTAGATATTAATT
TGCCAACGTTAAATGGTTTTCATTGGTGTCAAGAAATCCGAAAAACATCTAATGTGCCAATTATATTTATTAGTTCCCGT
ATTGATAATATGGACCAAATTATGGCAATACAAATGGGGGGAGATGATTTTATCGAAAAACCATTTAACTTGTCATTAAC
GATTGCCAAAATTCAAGCATTATTGAGACGAACTTATGACTTGTCAGTAGCTAATGATTCATTGACGGTTAAAGGTTGTA
CATTAATATTAGATGAAGCAAAAGTCGTGTATCAAGAACAAAGCATACAGCTATCTTTGACTGAATTACAAATATTAAAG
TTATTATTTCAAAATGAAGATAAATATGTAAGTAGAACTGCTTTAATTGAAAAATGTTGGGAATCAGAAAACTTCATAGA
TGATAACACATTAGCTGTTAACATGACGCGCCTGCGTAAAAAATTAAATACTATTGGCGTTAATGATTTTATCATTACAA
AGAAAAATGTCGGATATAAAGTATAG

Domains

Predicted by InterproScan.

Transcriptional regulatory protein, C terminal (Trans_reg_C)

(147-220)

Response regulator receiver domain (Response_reg)

(3-111)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  braR Staphylococcus aureus N315

99.548

100

0.995