Detailed information
Bioinformatically predicted
Overview
| Name | ssbA | Type | Machinery gene |
| Locus tag | LB316_RS01935 | Genome accession | NZ_CP084107 |
| Coordinates | 401099..401602 (+) | Length | 167 a.a. |
| NCBI ID | WP_000934799.1 | Uniprot ID | A0A7U7IE99 |
| Organism | Staphylococcus aureus strain CC49/ST49-MSSA | ||
| Function | ssDNA binding (predicted from homology) DNA processing |
||
Related MGE
Note: This gene co-localizes with putative mobile genetic elements (MGEs) in the genome predicted by VRprofile2, as detailed below.
Gene-MGE association summary
| MGE type | MGE coordinates | Gene coordinates | Relative position | Distance (bp) |
|---|---|---|---|---|
| Prophage | 397039..421835 | 401099..401602 | within | 0 |
Gene organization within MGE regions
Location: 397039..421835
| Locus tag | Gene name | Coordinates (strand) | Size (bp) | Protein ID | Product | Description |
|---|---|---|---|---|---|---|
| LB316_RS01905 (LB316_01905) | - | 397039..397884 (+) | 846 | WP_014363379.1 | ParB/RepB/Spo0J family partition protein | - |
| LB316_RS01910 (LB316_01910) | - | 398038..398919 (+) | 882 | WP_000373075.1 | mechanosensitive ion channel family protein | - |
| LB316_RS01915 (LB316_01915) | - | 398949..399152 (+) | 204 | WP_000157348.1 | DUF951 domain-containing protein | - |
| LB316_RS01920 (LB316_01920) | ychF | 399164..400261 (+) | 1098 | WP_001218732.1 | redox-regulated ATPase YchF | - |
| LB316_RS01925 (LB316_01925) | - | 400347..400538 (-) | 192 | WP_001052483.1 | hypothetical protein | - |
| LB316_RS01930 (LB316_01930) | rpsF | 400782..401078 (+) | 297 | WP_001261460.1 | 30S ribosomal protein S6 | - |
| LB316_RS01935 (LB316_01935) | ssbA | 401099..401602 (+) | 504 | WP_000934799.1 | single-stranded DNA-binding protein | Machinery gene |
| LB316_RS01940 (LB316_01940) | rpsR | 401654..401896 (+) | 243 | WP_000897044.1 | 30S ribosomal protein S18 | - |
| LB316_RS01945 (LB316_01945) | - | 402133..403032 (-) | 900 | WP_229375535.1 | Abi family protein | - |
| LB316_RS01950 (LB316_01950) | - | 403034..404248 (-) | 1215 | WP_229375537.1 | site-specific integrase | - |
| LB316_RS01955 (LB316_01955) | - | 405208..405840 (-) | 633 | WP_229375539.1 | helix-turn-helix transcriptional regulator | - |
| LB316_RS01960 (LB316_01960) | - | 406021..406257 (+) | 237 | WP_229375541.1 | helix-turn-helix transcriptional regulator | - |
| LB316_RS01965 (LB316_01965) | - | 406312..406584 (+) | 273 | WP_229375543.1 | helix-turn-helix domain-containing protein | - |
| LB316_RS01970 (LB316_01970) | - | 406596..406742 (+) | 147 | WP_229374473.1 | pathogenicity island protein | - |
| LB316_RS01975 (LB316_01975) | - | 406735..406944 (+) | 210 | WP_229375545.1 | hypothetical protein | - |
| LB316_RS01980 (LB316_01980) | - | 406944..407267 (+) | 324 | WP_229375547.1 | DUF1474 family protein | - |
| LB316_RS01985 (LB316_01985) | - | 407333..409585 (+) | 2253 | WP_229375548.1 | phage/plasmid primase, P4 family | - |
| LB316_RS01990 (LB316_01990) | - | 409857..410204 (+) | 348 | WP_229375549.1 | hypothetical protein | - |
| LB316_RS01995 (LB316_01995) | - | 410201..410464 (+) | 264 | WP_229375551.1 | hypothetical protein | - |
| LB316_RS02000 (LB316_02000) | - | 410931..411272 (+) | 342 | WP_001190614.1 | hypothetical protein | - |
| LB316_RS02005 (LB316_02005) | - | 411303..411956 (+) | 654 | WP_000214170.1 | hypothetical protein | - |
| LB316_RS02010 (LB316_02010) | - | 412009..412536 (+) | 528 | WP_111762497.1 | spore coat protein | - |
| LB316_RS02015 (LB316_02015) | - | 412539..412880 (+) | 342 | WP_001662732.1 | hypothetical protein | - |
| LB316_RS02020 (LB316_02020) | - | 412877..413446 (+) | 570 | WP_229375552.1 | terminase small subunit | - |
| LB316_RS02025 (LB316_02025) | - | 413605..413955 (+) | 351 | WP_229375553.1 | complement inhibitor SCIN family protein | - |
| LB316_RS02030 (LB316_02030) | vwb | 414215..415714 (+) | 1500 | WP_229375557.1 | von Willebrand factor binding protein Vwb | - |
| LB316_RS02035 (LB316_02035) | - | 415881..416237 (+) | 357 | WP_275112644.1 | DUF3102 domain-containing protein | - |
| LB316_RS02040 (LB316_02040) | - | 416888..417826 (-) | 939 | WP_078064570.1 | Abi family protein | - |
| LB316_RS02045 (LB316_02045) | - | 417865..418579 (-) | 715 | Protein_408 | site-specific integrase | - |
| LB316_RS02050 (LB316_02050) | selX | 418785..419396 (+) | 612 | WP_000475331.1 | staphylococcal enterotoxin-like toxin X | - |
| LB316_RS02055 (LB316_02055) | - | 419765..420133 (+) | 369 | WP_000849172.1 | YxeA family protein | - |
| LB316_RS02060 (LB316_02060) | - | 420314..420886 (+) | 573 | WP_000769722.1 | PepSY domain-containing protein | - |
| LB316_RS02065 (LB316_02065) | - | 421024..421287 (-) | 264 | WP_001055897.1 | helix-turn-helix transcriptional regulator | - |
| LB316_RS02070 (LB316_02070) | - | 421581..421835 (+) | 255 | WP_000466744.1 | GlsB/YeaQ/YmgE family stress response membrane protein | - |
Sequence
Protein
Download Length: 167 a.a. Molecular weight: 18539.12 Da Isoelectric Point: 4.7305
>NTDB_id=609560 LB316_RS01935 WP_000934799.1 401099..401602(+) (ssbA) [Staphylococcus aureus strain CC49/ST49-MSSA]
MLNRVVLVGRLTKDPEYRTTPSGVSVATFTLAVNRTFTNAQGEREADFINCVVFRRQADNVNNYLSKGSLAGVDGRLQSR
NYENQEGRRVFVTEVVCDSVQFLEPKNAQQNGGQRQQNEFQDYGQGFGGQQSGQNNSYNNSSNTKQSDNPFANANGPIDI
SDDDLPF
MLNRVVLVGRLTKDPEYRTTPSGVSVATFTLAVNRTFTNAQGEREADFINCVVFRRQADNVNNYLSKGSLAGVDGRLQSR
NYENQEGRRVFVTEVVCDSVQFLEPKNAQQNGGQRQQNEFQDYGQGFGGQQSGQNNSYNNSSNTKQSDNPFANANGPIDI
SDDDLPF
Nucleotide
Download Length: 504 bp
>NTDB_id=609560 LB316_RS01935 WP_000934799.1 401099..401602(+) (ssbA) [Staphylococcus aureus strain CC49/ST49-MSSA]
ATGCTAAATAGAGTTGTATTAGTAGGTCGTTTAACGAAAGATCCGGAATACAGAACCACTCCCTCAGGTGTGAGTGTAGC
GACATTCACTCTTGCAGTAAATCGTACGTTCACGAATGCTCAAGGGGAGCGCGAAGCAGATTTTATTAACTGTGTTGTTT
TTAGAAGACAAGCAGATAATGTAAATAACTATTTATCTAAAGGTAGTTTAGCTGGTGTAGATGGTCGCTTACAATCCCGT
AATTATGAAAATCAAGAAGGTCGTCGTGTGTTTGTTACTGAAGTTGTGTGTGATAGTGTTCAATTCCTTGAACCTAAAAA
TGCGCAACAAAATGGTGGCCAACGTCAACAAAATGAATTCCAAGATTACGGTCAAGGATTCGGTGGTCAACAATCAGGAC
AAAACAATTCGTACAATAATTCATCAAACACGAAACAATCTGATAATCCATTTGCAAATGCAAACGGACCGATTGATATA
AGTGATGATGACTTACCATTCTAA
ATGCTAAATAGAGTTGTATTAGTAGGTCGTTTAACGAAAGATCCGGAATACAGAACCACTCCCTCAGGTGTGAGTGTAGC
GACATTCACTCTTGCAGTAAATCGTACGTTCACGAATGCTCAAGGGGAGCGCGAAGCAGATTTTATTAACTGTGTTGTTT
TTAGAAGACAAGCAGATAATGTAAATAACTATTTATCTAAAGGTAGTTTAGCTGGTGTAGATGGTCGCTTACAATCCCGT
AATTATGAAAATCAAGAAGGTCGTCGTGTGTTTGTTACTGAAGTTGTGTGTGATAGTGTTCAATTCCTTGAACCTAAAAA
TGCGCAACAAAATGGTGGCCAACGTCAACAAAATGAATTCCAAGATTACGGTCAAGGATTCGGTGGTCAACAATCAGGAC
AAAACAATTCGTACAATAATTCATCAAACACGAAACAATCTGATAATCCATTTGCAAATGCAAACGGACCGATTGATATA
AGTGATGATGACTTACCATTCTAA
Similar proteins
Only experimentally validated proteins are listed.
| Protein | Organism | Identities (%) | Coverage (%) | Ha-value |
|---|---|---|---|---|
| ssbA | Bacillus subtilis subsp. subtilis str. 168 |
65.341 |
100 |
0.689 |
| ssb | Latilactobacillus sakei subsp. sakei 23K |
54.971 |
100 |
0.563 |
| ssbB | Bacillus subtilis subsp. subtilis str. 168 |
58.491 |
63.473 |
0.371 |
| ssb | Glaesserella parasuis strain SC1401 |
34.463 |
100 |
0.365 |