Detailed information    

insolico Bioinformatically predicted

Overview

Name   ssbA   Type   Machinery gene
Locus tag   LB316_RS01935 Genome accession   NZ_CP084107
Coordinates   401099..401602 (+) Length   167 a.a.
NCBI ID   WP_000934799.1    Uniprot ID   A0A7U7IE99
Organism   Staphylococcus aureus strain CC49/ST49-MSSA     
Function   ssDNA binding (predicted from homology)   
DNA processing

Genomic Context

Location: 396099..406602
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  LB316_RS01905 (LB316_01905) - 397039..397884 (+) 846 WP_014363379.1 ParB/RepB/Spo0J family partition protein -
  LB316_RS01910 (LB316_01910) - 398038..398919 (+) 882 WP_000373075.1 mechanosensitive ion channel family protein -
  LB316_RS01915 (LB316_01915) - 398949..399152 (+) 204 WP_000157348.1 DUF951 domain-containing protein -
  LB316_RS01920 (LB316_01920) ychF 399164..400261 (+) 1098 WP_001218732.1 redox-regulated ATPase YchF -
  LB316_RS01925 (LB316_01925) - 400347..400538 (-) 192 WP_001052483.1 hypothetical protein -
  LB316_RS01930 (LB316_01930) rpsF 400782..401078 (+) 297 WP_001261460.1 30S ribosomal protein S6 -
  LB316_RS01935 (LB316_01935) ssbA 401099..401602 (+) 504 WP_000934799.1 single-stranded DNA-binding protein Machinery gene
  LB316_RS01940 (LB316_01940) rpsR 401654..401896 (+) 243 WP_000897044.1 30S ribosomal protein S18 -
  LB316_RS01945 (LB316_01945) - 402133..403032 (-) 900 WP_229375535.1 Abi family protein -
  LB316_RS01950 (LB316_01950) - 403034..404248 (-) 1215 WP_229375537.1 site-specific integrase -
  LB316_RS01955 (LB316_01955) - 405208..405840 (-) 633 WP_229375539.1 helix-turn-helix transcriptional regulator -
  LB316_RS01960 (LB316_01960) - 406021..406257 (+) 237 WP_229375541.1 helix-turn-helix transcriptional regulator -
  LB316_RS01965 (LB316_01965) - 406312..406584 (+) 273 WP_229375543.1 helix-turn-helix domain-containing protein -

Sequence

Protein


Download         Length: 167 a.a.        Molecular weight: 18539.12 Da        Isoelectric Point: 4.7305

>NTDB_id=609560 LB316_RS01935 WP_000934799.1 401099..401602(+) (ssbA) [Staphylococcus aureus strain CC49/ST49-MSSA]
MLNRVVLVGRLTKDPEYRTTPSGVSVATFTLAVNRTFTNAQGEREADFINCVVFRRQADNVNNYLSKGSLAGVDGRLQSR
NYENQEGRRVFVTEVVCDSVQFLEPKNAQQNGGQRQQNEFQDYGQGFGGQQSGQNNSYNNSSNTKQSDNPFANANGPIDI
SDDDLPF

Nucleotide


Download         Length: 504 bp        

>NTDB_id=609560 LB316_RS01935 WP_000934799.1 401099..401602(+) (ssbA) [Staphylococcus aureus strain CC49/ST49-MSSA]
ATGCTAAATAGAGTTGTATTAGTAGGTCGTTTAACGAAAGATCCGGAATACAGAACCACTCCCTCAGGTGTGAGTGTAGC
GACATTCACTCTTGCAGTAAATCGTACGTTCACGAATGCTCAAGGGGAGCGCGAAGCAGATTTTATTAACTGTGTTGTTT
TTAGAAGACAAGCAGATAATGTAAATAACTATTTATCTAAAGGTAGTTTAGCTGGTGTAGATGGTCGCTTACAATCCCGT
AATTATGAAAATCAAGAAGGTCGTCGTGTGTTTGTTACTGAAGTTGTGTGTGATAGTGTTCAATTCCTTGAACCTAAAAA
TGCGCAACAAAATGGTGGCCAACGTCAACAAAATGAATTCCAAGATTACGGTCAAGGATTCGGTGGTCAACAATCAGGAC
AAAACAATTCGTACAATAATTCATCAAACACGAAACAATCTGATAATCCATTTGCAAATGCAAACGGACCGATTGATATA
AGTGATGATGACTTACCATTCTAA

Domains

Predicted by InterProScan.

Single-strand binding protein family (SSB)

(2-103)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  ssbA Bacillus subtilis subsp. subtilis str. 168

65.341

100

0.689
  ssb Latilactobacillus sakei subsp. sakei 23K

54.971

100

0.563
  ssbB Bacillus subtilis subsp. subtilis str. 168

58.491

63.473

0.371
  ssb Glaesserella parasuis strain SC1401

34.463

100

0.365