Detailed information    

insolico Bioinformatically predicted

Overview

Name   pilH   Type   Machinery gene
Locus tag   Dongsha4_RS06485 Genome accession   NZ_CP084098
Coordinates   1537581..1537940 (-) Length   119 a.a.
NCBI ID   WP_015220395.1    Uniprot ID   A0A844GR21
Organism   Cyanobacterium sp. Dongsha4     
Function   type IV pilus biogenesis and function (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 1532581..1542940
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  Dongsha4_RS06460 (Dongsha4_06485) - 1532889..1533851 (-) 963 WP_330204883.1 glycosyltransferase family 9 protein -
  Dongsha4_RS06465 (Dongsha4_06490) - 1534236..1534853 (-) 618 WP_330204884.1 VWA domain-containing protein -
  Dongsha4_RS06470 (Dongsha4_06495) - 1535013..1535324 (+) 312 WP_330204885.1 hypothetical protein -
  Dongsha4_RS06475 (Dongsha4_06500) urtC 1535418..1536575 (-) 1158 WP_330204886.1 urea ABC transporter permease subunit UrtC -
  Dongsha4_RS06480 (Dongsha4_06505) - 1536700..1537236 (-) 537 WP_330204887.1 chemotaxis protein CheW -
  Dongsha4_RS06485 (Dongsha4_06510) pilH 1537581..1537940 (-) 360 WP_015220395.1 response regulator Machinery gene
  Dongsha4_RS06490 (Dongsha4_06515) - 1538082..1539284 (-) 1203 WP_330204888.1 response regulator -
  Dongsha4_RS06495 (Dongsha4_06520) - 1539577..1541076 (-) 1500 WP_330204889.1 AAA family ATPase -

Sequence

Protein


Download         Length: 119 a.a.        Molecular weight: 12850.87 Da        Isoelectric Point: 4.7399

>NTDB_id=609524 Dongsha4_RS06485 WP_015220395.1 1537581..1537940(-) (pilH) [Cyanobacterium sp. Dongsha4]
MGNALIVDDSSTERKILTGYLQELGISVTTAESGEEALEKIKGNTPDLVVLDVVLPGKSGFEVCREIKSGTNTGKIPIIM
CSTKGSEMDKFWGMKQGADAYIPKPVDKEEFLSAVKKLI

Nucleotide


Download         Length: 360 bp        

>NTDB_id=609524 Dongsha4_RS06485 WP_015220395.1 1537581..1537940(-) (pilH) [Cyanobacterium sp. Dongsha4]
ATGGGAAACGCATTAATTGTTGATGATTCTTCCACTGAAAGAAAAATTTTAACAGGTTATTTACAGGAATTGGGTATTAG
TGTTACAACCGCCGAAAGTGGAGAGGAAGCCCTTGAAAAAATTAAAGGTAATACACCTGATCTAGTGGTTTTAGATGTGG
TTTTGCCGGGGAAAAGTGGCTTTGAAGTATGTCGAGAAATAAAATCAGGTACAAATACAGGTAAAATACCTATTATTATG
TGTTCTACAAAAGGTAGCGAGATGGACAAATTTTGGGGAATGAAGCAGGGTGCAGATGCTTATATTCCAAAACCAGTGGA
TAAAGAAGAATTCCTCAGTGCCGTCAAAAAACTAATTTAG

Domains

Predicted by InterproScan.

Response regulator receiver domain (Response_reg)

(5-115)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB A0A844GR21

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  pilH Synechocystis sp. PCC 6803

52.101

100

0.521
  vicR Streptococcus mutans UA159

41.379

97.479

0.403
  micA Streptococcus pneumoniae Cp1015

39.496

100

0.395
  pilG Acinetobacter baumannii strain A118

38.261

96.639

0.37