Detailed information    

insolico Bioinformatically predicted

Overview

Name   ssb   Type   Machinery gene
Locus tag   JCM7686_RS10860 Genome accession   NC_022041
Coordinates   2230331..2230864 (+) Length   177 a.a.
NCBI ID   WP_020950880.1    Uniprot ID   -
Organism   Paracoccus aminophilus JCM 7686     
Function   ssDNA binding (predicted from homology)   
DNA processing

Related MGE

Note: This gene co-localizes with putative mobile genetic elements (MGEs) in the genome predicted by VRprofile2, as detailed below.

Gene-MGE association summary

MGE type MGE coordinates Gene coordinates Relative position Distance (bp)
IScluster/Tn 2231465..2232552 2230331..2230864 flank 601


Gene organization within MGE regions


Location: 2230331..2232552
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  JCM7686_RS10860 (JCM7686_2161) ssb 2230331..2230864 (+) 534 WP_020950880.1 single-stranded DNA-binding protein Machinery gene

Sequence

Protein


Download         Length: 177 a.a.        Molecular weight: 18953.44 Da        Isoelectric Point: 5.8118

>NTDB_id=60946 JCM7686_RS10860 WP_020950880.1 2230331..2230864(+) (ssb) [Paracoccus aminophilus JCM 7686]
MAGSVNKVILVGNLGQDPEIRNFPNGGKVANLRIATSESWKDRNSGERRERTEWHTVAIYSEPLVRVAEQFLRKGSKVYV
EGQLETRKWQDQQGNDRYSTEVALRPFRSELHMLDGRGGSGGGQGGGSYGGGRDDYNDGGYGGGSSGGPSSGGQSSGGQS
SGGYSSNRPDFDDDIPF

Nucleotide


Download         Length: 534 bp        

>NTDB_id=60946 JCM7686_RS10860 WP_020950880.1 2230331..2230864(+) (ssb) [Paracoccus aminophilus JCM 7686]
ATGGCAGGCAGTGTAAACAAGGTAATTCTGGTCGGGAATCTTGGTCAGGACCCCGAAATCCGGAACTTCCCGAACGGCGG
CAAGGTCGCGAACCTGCGGATCGCGACCAGCGAAAGCTGGAAGGATCGCAACTCAGGCGAACGTCGCGAGCGTACGGAAT
GGCACACGGTCGCAATCTACTCCGAGCCGCTCGTCCGCGTGGCCGAGCAATTCCTGCGCAAAGGCTCGAAGGTCTATGTC
GAGGGCCAGCTCGAAACGCGTAAATGGCAGGATCAACAAGGCAATGACCGCTATTCGACCGAGGTCGCGCTGCGCCCCTT
CCGGTCCGAACTGCATATGCTCGACGGTCGCGGTGGTTCGGGCGGCGGTCAGGGCGGTGGCTCTTACGGCGGCGGCCGCG
ATGACTACAATGACGGCGGCTACGGCGGTGGTTCGTCCGGCGGTCCGTCGTCGGGTGGCCAATCTTCCGGAGGCCAGTCC
TCGGGTGGCTATTCCTCGAACCGCCCGGACTTCGACGACGACATCCCGTTCTGA

Domains

Predicted by InterproScan.

Single-strand binding protein family (SSB)

(5-105)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  ssb Glaesserella parasuis strain SC1401

48.947

100

0.525
  ssb Vibrio cholerae strain A1552

50.273

100

0.52
  ssb Neisseria meningitidis MC58

40.223

100

0.407
  ssb Neisseria gonorrhoeae MS11

39.665

100

0.401

Multiple sequence alignment