Detailed information    

insolico Bioinformatically predicted

Overview

Name   ssb   Type   Machinery gene
Locus tag   NML26_RS22700 Genome accession   NZ_CP101210
Coordinates   4639513..4640049 (-) Length   178 a.a.
NCBI ID   WP_000168305.1    Uniprot ID   A0A370V115
Organism   Escherichia coli strain EC21Z-147     
Function   ssDNA binding (predicted from homology)   
DNA processing

Genomic Context

Location: 4634513..4645049
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  NML26_RS22680 (NML26_22690) soxR 4636242..4636706 (-) 465 WP_039004760.1 redox-sensitive transcriptional activator SoxR -
  NML26_RS22685 (NML26_22695) soxS 4636792..4637115 (+) 324 WP_000019358.1 superoxide response transcriptional regulator SoxS -
  NML26_RS22690 (NML26_22700) pdeC 4637118..4638704 (-) 1587 WP_000017978.1 c-di-GMP phosphodiesterase PdeC -
  NML26_RS22695 (NML26_22705) yjcB 4639133..4639414 (+) 282 WP_001295689.1 YjcB family protein -
  NML26_RS22700 (NML26_22710) ssb 4639513..4640049 (-) 537 WP_000168305.1 single-stranded DNA-binding protein SSB1 Machinery gene
  NML26_RS22705 (NML26_22715) uvrA 4640304..4643126 (+) 2823 WP_000357740.1 excinuclease ABC subunit UvrA Machinery gene
  NML26_RS22710 (NML26_22720) yjbR 4643161..4643517 (-) 357 WP_000155648.1 MmcQ/YjbR family DNA-binding protein -
  NML26_RS22715 (NML26_22725) yjbQ 4643521..4643937 (-) 417 WP_000270375.1 secondary thiamine-phosphate synthase enzyme YjbQ -
  NML26_RS22720 (NML26_22730) aphA 4644048..4644761 (-) 714 WP_001317548.1 acid phosphatase AphA -

Sequence

Protein


Download         Length: 178 a.a.        Molecular weight: 18975.00 Da        Isoelectric Point: 5.2358

>NTDB_id=609202 NML26_RS22700 WP_000168305.1 4639513..4640049(-) (ssb) [Escherichia coli strain EC21Z-147]
MASRGVNKVILVGNLGQDPEVRYMPNGGAVANITLATSESWRDKATGEMKEQTEWHRVVLFGKLAEVASEYLRKGSQVYI
EGQLRTRKWTDQSGQDRYTTEVVVNVGGTMQMLGGRQGGGAPAGGNIGGGQPQGGWGQPQQPQGGNQFSGGAQSRPQQSA
PAAPSNEPPMDFDDDIPF

Nucleotide


Download         Length: 537 bp        

>NTDB_id=609202 NML26_RS22700 WP_000168305.1 4639513..4640049(-) (ssb) [Escherichia coli strain EC21Z-147]
ATGGCCAGCAGAGGCGTAAACAAGGTTATTCTCGTTGGTAATCTGGGTCAGGACCCGGAAGTACGCTACATGCCAAATGG
TGGCGCAGTTGCCAACATTACGCTGGCTACTTCCGAATCCTGGCGTGATAAAGCGACCGGCGAGATGAAAGAGCAGACTG
AATGGCACCGCGTTGTGCTGTTCGGCAAACTGGCAGAAGTGGCCAGCGAATATCTGCGTAAAGGTTCTCAGGTTTATATC
GAAGGTCAGCTGCGTACCCGCAAATGGACCGATCAATCCGGTCAGGATCGCTACACCACAGAAGTCGTGGTGAACGTTGG
CGGCACCATGCAGATGTTGGGTGGTCGTCAGGGTGGTGGCGCTCCTGCAGGTGGCAATATCGGTGGTGGTCAGCCGCAGG
GCGGTTGGGGTCAGCCTCAGCAGCCGCAGGGCGGCAATCAGTTCAGCGGCGGCGCGCAGTCTCGCCCGCAGCAGTCTGCT
CCGGCAGCACCGTCTAATGAGCCGCCGATGGACTTTGATGACGATATTCCGTTCTGA

Domains

Predicted by InterProScan.

Single-strand binding protein family (SSB)

(6-112)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB A0A370V115

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  ssb Vibrio cholerae strain A1552

74.444

100

0.753
  ssb Glaesserella parasuis strain SC1401

57.923

100

0.596
  ssb Neisseria meningitidis MC58

48.066

100

0.489
  ssb Neisseria gonorrhoeae MS11

48.066

100

0.489