Detailed information    

insolico Bioinformatically predicted

Overview

Name   ssbA   Type   Machinery gene
Locus tag   LCF45_RS26920 Genome accession   NZ_CP084035
Coordinates   5248283..5248804 (-) Length   173 a.a.
NCBI ID   WP_000981963.1    Uniprot ID   -
Organism   Bacillus sp. 41-22     
Function   ssDNA binding (predicted from homology)   
DNA processing

Genomic Context

Location: 5243283..5253804
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  LCF45_RS26900 (LCF45_26860) rplI 5244493..5244939 (-) 447 WP_002130186.1 50S ribosomal protein L9 -
  LCF45_RS26905 (LCF45_26865) - 5244936..5246909 (-) 1974 WP_002016460.1 DHH family phosphoesterase -
  LCF45_RS26910 (LCF45_26870) - 5246988..5247923 (-) 936 WP_002130187.1 YybS family protein -
  LCF45_RS26915 (LCF45_26875) rpsR 5248005..5248238 (-) 234 WP_000918874.1 30S ribosomal protein S18 -
  LCF45_RS26920 (LCF45_26880) ssbA 5248283..5248804 (-) 522 WP_000981963.1 single-stranded DNA-binding protein Machinery gene
  LCF45_RS26925 (LCF45_26885) rpsF 5248831..5249121 (-) 291 WP_001233782.1 30S ribosomal protein S6 -
  LCF45_RS26930 (LCF45_26890) ychF 5249313..5250413 (-) 1101 WP_000524661.1 redox-regulated ATPase YchF -
  LCF45_RS26935 (LCF45_26895) - 5250529..5250726 (-) 198 WP_000436054.1 DUF951 domain-containing protein -
  LCF45_RS26940 (LCF45_26900) - 5250747..5251604 (-) 858 WP_000362302.1 mechanosensitive ion channel family protein -
  LCF45_RS26945 (LCF45_26905) yyaC 5251865..5252461 (+) 597 WP_001020734.1 spore protease YyaC -
  LCF45_RS26950 (LCF45_26910) spo0J 5252482..5253333 (-) 852 WP_175491564.1 stage 0 sporulation protein Spo0J -

Sequence

Protein


Download         Length: 173 a.a.        Molecular weight: 18809.58 Da        Isoelectric Point: 4.9222

>NTDB_id=609197 LCF45_RS26920 WP_000981963.1 5248283..5248804(-) (ssbA) [Bacillus sp. 41-22]
MMNRVILVGRLTKDPDLRYTPNGVAVATFTLAVNRAFANQQGEREADFINCVIWRKQAENVANYLKKGSLAGVDGRLQTR
NYDGQDGKRVYVTEVLAESVQFLEPRNGGGEQRGSFNQQPSGAGFGNQSSNPFGQSSNSGNQGNQGNSGFTKNDDPFSNV
GQPIDISDDDLPF

Nucleotide


Download         Length: 522 bp        

>NTDB_id=609197 LCF45_RS26920 WP_000981963.1 5248283..5248804(-) (ssbA) [Bacillus sp. 41-22]
TTGATGAATCGTGTTATCCTCGTTGGTCGTTTAACTAAGGACCCTGACTTACGTTACACGCCCAATGGTGTTGCAGTAGC
TACTTTTACGTTAGCTGTGAATCGCGCATTTGCGAATCAACAAGGTGAGCGTGAAGCTGACTTTATTAATTGTGTAATAT
GGCGTAAACAAGCAGAAAACGTGGCAAATTATTTGAAAAAAGGTAGCTTAGCAGGCGTAGACGGACGTCTTCAAACTCGT
AATTACGATGGACAAGATGGTAAACGTGTATATGTAACAGAAGTTCTTGCGGAGAGCGTACAATTTTTAGAGCCGCGTAA
TGGCGGTGGGGAGCAACGTGGTTCATTCAATCAGCAACCATCAGGAGCTGGTTTCGGTAACCAAAGCTCTAACCCATTTG
GTCAATCTAGTAATTCAGGTAACCAAGGTAATCAAGGTAACTCTGGATTTACGAAGAATGACGATCCATTTTCGAATGTT
GGTCAACCGATTGACATTTCGGACGACGATTTACCATTTTAA

Domains

Predicted by InterproScan.

Single-strand binding protein family (SSB)

(2-103)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  ssbA Bacillus subtilis subsp. subtilis str. 168

71.751

100

0.734
  ssb Latilactobacillus sakei subsp. sakei 23K

57.714

100

0.584
  ssbB Bacillus subtilis subsp. subtilis str. 168

64.151

61.272

0.393
  ssb Glaesserella parasuis strain SC1401

36.264

100

0.382