Detailed information    

insolico Bioinformatically predicted

Overview

Name   ssb   Type   Machinery gene
Locus tag   APA386B_RS06470 Genome accession   NC_021991
Coordinates   1450474..1451034 (+) Length   186 a.a.
NCBI ID   WP_003626515.1    Uniprot ID   A0A401X6N0
Organism   Acetobacter pasteurianus 386B     
Function   ssDNA binding (predicted from homology)   
DNA processing

Genomic Context

Location: 1445474..1456034
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  APA386B_RS06445 (APA386B_1373) - 1445609..1447177 (-) 1569 WP_035362637.1 Do family serine endopeptidase -
  APA386B_RS06450 (APA386B_1374) - 1447353..1447808 (-) 456 WP_003626503.1 nucleoside deaminase -
  APA386B_RS15360 (APA386B_1376) - 1448029..1448181 (+) 153 WP_003626506.1 hypothetical protein -
  APA386B_RS06455 (APA386B_1377) - 1448306..1449037 (+) 732 WP_020944478.1 gamma-glutamyl-gamma-aminobutyrate hydrolase family protein -
  APA386B_RS06460 (APA386B_1378) - 1449034..1449810 (+) 777 WP_003626510.1 pseudouridine synthase -
  APA386B_RS06465 (APA386B_1379) rsmD 1449810..1450394 (+) 585 WP_003626513.1 16S rRNA (guanine(966)-N(2))-methyltransferase RsmD -
  APA386B_RS06470 (APA386B_1380) ssb 1450474..1451034 (+) 561 WP_003626515.1 single-stranded DNA-binding protein Machinery gene
  APA386B_RS06475 (APA386B_1381) - 1451096..1452370 (+) 1275 WP_003626517.1 O-antigen ligase -
  APA386B_RS06480 (APA386B_1382) dksA 1452586..1452999 (+) 414 WP_003626519.1 RNA polymerase-binding protein DksA -
  APA386B_RS15565 (APA386B_1383) - 1453241..1454500 (+) 1260 WP_003627450.1 site-specific integrase -
  APA386B_RS06495 (APA386B_1384) - 1454539..1455207 (-) 669 WP_003627449.1 hypothetical protein -
  APA386B_RS06500 (APA386B_1385) - 1455191..1455778 (-) 588 WP_003627447.1 recombinase family protein -

Sequence

Protein


Download         Length: 186 a.a.        Molecular weight: 19838.50 Da        Isoelectric Point: 5.3755

>NTDB_id=60915 APA386B_RS06470 WP_003626515.1 1450474..1451034(+) (ssb) [Acetobacter pasteurianus 386B]
MAGSVNKVILVGNLGKDPEVRSSQSGAKIVSFSLATSDTWNDRASGERRERTEWHRVVIFNERLADVAERFLRKGRKVYL
EGSLQTRKWTDQGGQERYTTEVIIDRFRGELVLLDSRNSSEGEGEGGGFGGGSGSSYGGYNSGGGGGYGAPSSAPRQQPA
QRSGGNNSGGWDASGGNGDLDDEIPF

Nucleotide


Download         Length: 561 bp        

>NTDB_id=60915 APA386B_RS06470 WP_003626515.1 1450474..1451034(+) (ssb) [Acetobacter pasteurianus 386B]
ATGGCTGGCAGCGTTAACAAGGTTATTCTGGTCGGCAATCTGGGCAAGGACCCCGAAGTGCGTTCCAGCCAGAGCGGTGC
AAAGATTGTTTCCTTCTCTCTGGCCACCAGCGACACATGGAATGACCGCGCATCTGGTGAACGACGTGAACGCACAGAAT
GGCATCGCGTGGTTATTTTCAACGAACGTCTGGCAGATGTGGCCGAACGCTTCTTGCGCAAAGGCCGCAAGGTTTATCTG
GAAGGCTCCCTGCAGACCAGAAAATGGACAGATCAGGGTGGGCAGGAACGCTACACGACGGAAGTGATTATCGACCGTTT
CCGTGGTGAACTGGTGCTGCTGGATAGCCGCAATAGTAGCGAAGGCGAAGGTGAAGGCGGCGGCTTTGGTGGCGGAAGCG
GCAGCAGCTACGGCGGCTATAACAGTGGTGGCGGCGGTGGTTATGGCGCCCCATCATCCGCACCACGCCAGCAACCAGCA
CAGCGCAGCGGTGGCAATAACTCCGGCGGCTGGGATGCATCTGGCGGCAACGGAGATCTTGATGACGAAATTCCGTTCTA
A

Domains

Predicted by InterproScan.

Single-strand binding protein family (SSB)

(5-107)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB A0A401X6N0

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  ssb Glaesserella parasuis strain SC1401

47.475

100

0.505
  ssb Vibrio cholerae strain A1552

44.565

98.925

0.441
  ssb Neisseria meningitidis MC58

38.798

98.387

0.382
  ssb Neisseria gonorrhoeae MS11

38.251

98.387

0.376

Multiple sequence alignment