Detailed information    

insolico Bioinformatically predicted

Overview

Name   ssb   Type   Machinery gene
Locus tag   LCF41_RS17900 Genome accession   NZ_CP084032
Coordinates   3947667..3948206 (+) Length   179 a.a.
NCBI ID   WP_225085724.1    Uniprot ID   -
Organism   Pectobacterium colocasium strain LJ1     
Function   ssDNA binding (predicted from homology)   
DNA processing

Genomic Context

Location: 3942667..3953206
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  LCF41_RS17880 - 3943249..3943665 (-) 417 WP_225085720.1 type II toxin-antitoxin system VapC family toxin -
  LCF41_RS17885 vapB 3943662..3943889 (-) 228 WP_225085721.1 type II toxin-antitoxin system VapB family antitoxin -
  LCF41_RS17890 - 3944152..3944571 (-) 420 WP_225085722.1 secondary thiamine-phosphate synthase enzyme YjbQ -
  LCF41_RS17895 uvrA 3944588..3947422 (-) 2835 WP_225085723.1 excinuclease ABC subunit UvrA -
  LCF41_RS17900 ssb 3947667..3948206 (+) 540 WP_225085724.1 single-stranded DNA-binding protein SSB1 Machinery gene
  LCF41_RS17905 - 3948816..3949097 (+) 282 WP_225085725.1 hypothetical protein -

Sequence

Protein


Download         Length: 179 a.a.        Molecular weight: 18945.90 Da        Isoelectric Point: 5.2456

>NTDB_id=609100 LCF41_RS17900 WP_225085724.1 3947667..3948206(+) (ssb) [Pectobacterium colocasium strain LJ1]
MASRGVNKVILVGNLGQDPEVRYMPNGGAVANITLATSESWRDKQTGEQKEKTEWHRVVLFGKLAEVAGEYLRKGSQVYI
EGALQTRKWADQAGVERYTTEVVVNVGGTMQMLGGRQGGGAPAGGGNAGGGQGGWGQPQQPQGGNQFSGGAQSQQRPAQN
STPAQSNEPPMDFDDDIPF

Nucleotide


Download         Length: 540 bp        

>NTDB_id=609100 LCF41_RS17900 WP_225085724.1 3947667..3948206(+) (ssb) [Pectobacterium colocasium strain LJ1]
ATGGCCAGCAGAGGCGTTAATAAAGTGATTCTTGTCGGGAATCTGGGTCAAGACCCGGAAGTCCGCTATATGCCGAATGG
CGGTGCAGTTGCCAACATCACGCTGGCGACGTCAGAAAGCTGGCGTGACAAGCAAACCGGTGAGCAGAAAGAGAAGACTG
AGTGGCACCGCGTGGTGCTGTTCGGCAAACTGGCAGAAGTGGCGGGCGAATACCTGCGTAAAGGCTCTCAGGTTTACATA
GAAGGCGCACTGCAAACCCGTAAATGGGCCGATCAGGCTGGCGTAGAACGCTACACCACCGAAGTCGTCGTTAATGTCGG
CGGCACCATGCAGATGTTAGGTGGACGCCAGGGCGGCGGCGCACCAGCAGGCGGTGGCAATGCAGGTGGCGGCCAAGGCG
GTTGGGGTCAACCTCAGCAGCCGCAGGGTGGCAACCAGTTCAGCGGCGGCGCGCAGTCTCAGCAACGCCCAGCGCAAAAT
AGCACGCCAGCACAAAGCAACGAACCACCAATGGATTTCGACGACGACATTCCGTTCTAA

Domains

Predicted by InterproScan.

Single-strand binding protein family (SSB)

(6-112)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  ssb Vibrio cholerae strain A1552

74.725

100

0.76
  ssb Glaesserella parasuis strain SC1401

57.143

100

0.603
  ssb Neisseria meningitidis MC58

46.067

99.441

0.458
  ssb Neisseria gonorrhoeae MS11

46.067

99.441

0.458