Detailed information    

insolico Bioinformatically predicted

Overview

Name   ssb   Type   Machinery gene
Locus tag   LCH18_RS00885 Genome accession   NZ_CP083947
Coordinates   207409..207993 (+) Length   194 a.a.
NCBI ID   WP_004691666.1    Uniprot ID   A0A7H8SPE4
Organism   Acinetobacter johnsonii strain CSUSB1     
Function   ssDNA binding (predicted from homology)   
DNA processing

Genomic Context

Location: 202409..212993
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  LCH18_RS00865 (LCH18_00865) - 203332..203706 (-) 375 WP_004978208.1 hypothetical protein -
  LCH18_RS00870 (LCH18_00870) tenA 203868..204542 (-) 675 WP_201701835.1 thiaminase II -
  LCH18_RS00875 (LCH18_00875) - 204754..205833 (+) 1080 WP_058870674.1 DUF475 domain-containing protein -
  LCH18_RS00880 (LCH18_00880) - 205993..207357 (+) 1365 WP_004978200.1 MFS transporter -
  LCH18_RS00885 (LCH18_00885) ssb 207409..207993 (+) 585 WP_004691666.1 single-stranded DNA-binding protein Machinery gene
  LCH18_RS00890 (LCH18_00890) - 208203..209621 (-) 1419 WP_224468075.1 aspartate ammonia-lyase -
  LCH18_RS00895 (LCH18_00895) - 209756..210646 (+) 891 WP_224468077.1 LysR substrate-binding domain-containing protein -
  LCH18_RS00900 (LCH18_00900) - 210780..212078 (-) 1299 WP_224468078.1 dicarboxylate/amino acid:cation symporter -

Sequence

Protein


Download         Length: 194 a.a.        Molecular weight: 21300.03 Da        Isoelectric Point: 6.4819

>NTDB_id=608742 LCH18_RS00885 WP_004691666.1 207409..207993(+) (ssb) [Acinetobacter johnsonii strain CSUSB1]
MRGVNKVILVGTLGRDPETKTFPNGGSLTQFSIATSDSWTDKSTGERKEQTEWHRIVLHNRLGEIAQQYLRKGSKVYIEG
SLRTRQWTDQNGQERYTTEIRGEQMQMLDNNRQQGEQMQGGNDGYAQPRFNNNQGGGYNNNNNQGGYGGNPAAGNSNNQQ
SGYANNNPSGFAPKAAPQSAPAAAPADMDDDLPF

Nucleotide


Download         Length: 585 bp        

>NTDB_id=608742 LCH18_RS00885 WP_004691666.1 207409..207993(+) (ssb) [Acinetobacter johnsonii strain CSUSB1]
ATGCGCGGTGTAAATAAAGTTATTTTAGTGGGCACATTAGGCCGAGATCCAGAGACGAAAACTTTCCCAAACGGTGGTTC
GTTGACCCAGTTTTCAATTGCAACGAGCGACTCTTGGACAGACAAAAGCACCGGTGAGCGTAAAGAGCAAACCGAATGGC
ACCGTATTGTGTTACACAACCGTCTAGGTGAAATTGCGCAACAATACCTACGTAAAGGTTCGAAAGTTTATATTGAGGGT
TCACTGCGTACTCGTCAGTGGACAGATCAAAATGGTCAAGAACGCTACACCACAGAAATTCGTGGTGAGCAAATGCAGAT
GCTCGACAACAACCGTCAGCAAGGCGAGCAAATGCAAGGCGGAAATGATGGTTATGCACAACCACGTTTCAACAATAACC
AAGGTGGTGGTTATAACAATAACAACAACCAAGGCGGTTATGGCGGTAATCCAGCAGCGGGTAATAGCAACAACCAACAA
AGTGGTTATGCGAACAATAACCCAAGCGGTTTTGCACCAAAGGCGGCTCCTCAGTCAGCGCCTGCGGCAGCACCAGCAGA
TATGGATGATGATCTTCCATTCTAA

Domains

Predicted by InterproScan.

Single-strand binding protein family (SSB)

(4-108)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB A0A7H8SPE4

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  ssb Glaesserella parasuis strain SC1401

50.246

100

0.526
  ssb Vibrio cholerae strain A1552

44.724

100

0.459
  ssb Neisseria meningitidis MC58

41.414

100

0.423
  ssb Neisseria gonorrhoeae MS11

41.414

100

0.423