Detailed information NTG0608728

Bioinformatically predicted

Overview

• Name: pilD
• Type: Machinery gene
• Locus tag: LCH17_RS09285
• Genome accession: NZ_CP083944
• Coordinates: 2043730..2044602 (+)
• Length: 290 a.a.
• NCBI ID: WP_224481187.1
• Uniprot ID: -
• Organism: Aeromonas hydrophila strain CSUSB2
• Function: assembly of type IV pilus (predicted from homology) DNA binding and uptake

Genomic Context

Location: 2038730..2049602

Locus tag	Gene name	Coordinates (strand)	Size (bp)	Protein ID	Product	Description
LCH17_RS09265 (LCH17_09265)	nadC	2039026..2039883 (+)	858	WP_224481186.1	carboxylating nicotinate-nucleotide diphosphorylase	-
LCH17_RS09270 (LCH17_09270)	-	2040206..2040637 (+)	432	WP_041216993.1	prepilin-type N-terminal cleavage/methylation domain-containing protein	-
LCH17_RS09275 (LCH17_09275)	pilB	2040644..2042350 (+)	1707	WP_146061427.1	PilB family type IVa pilus assembly ATPase TapB	Machinery gene
LCH17_RS09280 (LCH17_09280)	pilC	2042466..2043707 (+)	1242	WP_011707570.1	type II secretion system F family protein	Machinery gene
LCH17_RS09285 (LCH17_09285)	pilD	2043730..2044602 (+)	873	WP_224481187.1	A24 family peptidase	Machinery gene
LCH17_RS09290 (LCH17_09290)	coaE	2044622..2045236 (+)	615	WP_049046581.1	dephospho-CoA kinase	-
LCH17_RS09295 (LCH17_09295)	zapD	2045274..2045996 (+)	723	WP_162498668.1	cell division protein ZapD	-
LCH17_RS09300 (LCH17_09300)	yacG	2046006..2046200 (+)	195	WP_005305661.1	DNA gyrase inhibitor YacG	-
LCH17_RS09305 (LCH17_09305)	mutT	2046261..2046674 (-)	414	WP_016352173.1	8-oxo-dGTP diphosphatase MutT	-
LCH17_RS09310 (LCH17_09310)	-	2046683..2047867 (-)	1185	WP_224481188.1	tetratricopeptide repeat protein	-

Sequence

Protein

• Length: 290 a.a.
• Molecular weight: 32424.72 Da
• Isoelectric Point: 6.7410

>NTDB_id=608728 LCH17_RS09285 WP_224481187.1 2043730..2044602(+) (pilD) [Aeromonas hydrophila strain CSUSB2]
MLLITDVFHSLPWLYFSLVFLFSLMIGSFLNVVIHRLPIMLEREWQAEYLGYFNPEAQPQQEERYNLMVPRSACPHCGHA
ITAMENIPLLSWLWLKGRCRECQAPISARYPLVELLTALLSLVVAATFAPGWGLLAALLLTWVLVALTFIDLDKMLLPDQ
LTLPLLWGGLLFNLAGGFAPLADAVIGAMAGYLVLWSLYWAFKLLTGKEGMGYGDFKLLAALGAWLGWQALPIVLLLSSL
VGAFIGIGLILLRNHHQNKPIPFGPYLAIAGWIALLWGDTITRWYLTTFL

Nucleotide

• Length: 873 bp

>NTDB_id=608728 LCH17_RS09285 WP_224481187.1 2043730..2044602(+) (pilD) [Aeromonas hydrophila strain CSUSB2]
ATGTTGCTGATCACTGACGTTTTTCACAGCCTGCCCTGGCTCTATTTCTCGCTGGTATTCCTCTTTTCTCTGATGATCGG
CAGTTTTCTCAACGTGGTCATCCATCGCCTGCCCATCATGCTGGAGCGGGAGTGGCAGGCCGAATATCTCGGCTATTTCA
ATCCAGAGGCACAGCCGCAGCAGGAAGAGCGCTACAACCTGATGGTGCCGCGTTCTGCCTGCCCTCATTGCGGTCACGCC
ATCACGGCCATGGAGAACATCCCCCTGCTCAGCTGGCTCTGGCTCAAGGGGCGCTGCCGTGAATGCCAGGCCCCTATCTC
AGCCCGTTATCCTCTGGTGGAGCTGCTGACGGCCCTGCTCTCGCTGGTCGTCGCCGCAACATTCGCACCGGGCTGGGGCT
TGCTGGCCGCCCTGCTGCTCACCTGGGTACTGGTAGCGCTCACTTTCATCGACCTGGACAAGATGCTGCTGCCTGACCAG
CTGACCCTGCCACTGCTGTGGGGCGGCCTGCTGTTCAACCTGGCAGGGGGATTTGCGCCGCTGGCCGATGCGGTGATCGG
TGCCATGGCCGGCTATCTGGTGCTCTGGAGCCTCTACTGGGCCTTCAAGTTGCTGACCGGCAAGGAAGGGATGGGCTATG
GCGACTTCAAGCTGTTGGCGGCGCTGGGTGCCTGGCTCGGCTGGCAGGCACTGCCCATCGTGTTGCTGCTCTCGTCGCTG
GTTGGCGCTTTCATCGGGATTGGTCTCATTCTGCTGCGCAACCATCATCAGAACAAACCCATCCCCTTCGGCCCCTATCT
GGCCATCGCCGGCTGGATCGCGCTGCTGTGGGGCGATACCATCACCCGCTGGTACCTCACGACGTTTCTCTGA

Domains

Predicted by InterproScan.

• Bacterial Peptidase A24 N-terminal domain (A24_N_bact) (21-128)

• Type IV leader peptidase family (Peptidase_A24) (139-247)

Similar proteins

Only experimentally validated proteins are listed.

Protein	Organism	Identities (%)	Coverage (%)	Ha-value
pilD	Vibrio cholerae strain A1552	61.324	98.966	0.607
pilD	Vibrio campbellii strain DS40M4	55.944	98.621	0.552
pilD	Acinetobacter baumannii D1279779	54.225	97.931	0.531
pilD	Acinetobacter nosocomialis M2	54.225	97.931	0.531
pilD	Neisseria gonorrhoeae MS11	48.718	94.138	0.459