Detailed information    

insolico Bioinformatically predicted

Overview

Name   ssb   Type   Machinery gene
Locus tag   NMD28_RS20960 Genome accession   NZ_CP101001
Coordinates   4298714..4299250 (-) Length   178 a.a.
NCBI ID   WP_000168305.1    Uniprot ID   A0A370V115
Organism   Escherichia coli strain ET120     
Function   ssDNA binding (predicted from homology)   
DNA processing

Genomic Context

Location: 4293714..4304250
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  NMD28_RS20930 (NMD28_20835) soxR 4294666..4295130 (-) 465 WP_000412428.1 redox-sensitive transcriptional activator SoxR -
  NMD28_RS20935 (NMD28_20840) soxS 4295216..4295539 (+) 324 WP_000019358.1 superoxide response transcriptional regulator SoxS -
  NMD28_RS20940 (NMD28_20845) - 4295542..4296258 (-) 717 WP_077787923.1 EAL domain-containing protein -
  NMD28_RS20950 (NMD28_20855) pdeC 4297029..4297904 (-) 876 Protein_4095 c-di-GMP phosphodiesterase PdeC -
  NMD28_RS20955 (NMD28_20860) yjcB 4298334..4298615 (+) 282 WP_001295689.1 YjcB family protein -
  NMD28_RS20960 (NMD28_20865) ssb 4298714..4299250 (-) 537 WP_000168305.1 single-stranded DNA-binding protein SSB1 Machinery gene
  NMD28_RS20965 (NMD28_20870) uvrA 4299504..4302326 (+) 2823 WP_000357740.1 excinuclease ABC subunit UvrA Machinery gene
  NMD28_RS20970 (NMD28_20875) yjbR 4302361..4302717 (-) 357 WP_000155657.1 MmcQ/YjbR family DNA-binding protein -
  NMD28_RS20975 (NMD28_20880) yjbQ 4302721..4303137 (-) 417 WP_000270372.1 secondary thiamine-phosphate synthase enzyme YjbQ -
  NMD28_RS20980 (NMD28_20885) aphA 4303248..4303961 (-) 714 WP_001307512.1 acid phosphatase AphA -

Sequence

Protein


Download         Length: 178 a.a.        Molecular weight: 18975.00 Da        Isoelectric Point: 5.2358

>NTDB_id=608534 NMD28_RS20960 WP_000168305.1 4298714..4299250(-) (ssb) [Escherichia coli strain ET120]
MASRGVNKVILVGNLGQDPEVRYMPNGGAVANITLATSESWRDKATGEMKEQTEWHRVVLFGKLAEVASEYLRKGSQVYI
EGQLRTRKWTDQSGQDRYTTEVVVNVGGTMQMLGGRQGGGAPAGGNIGGGQPQGGWGQPQQPQGGNQFSGGAQSRPQQSA
PAAPSNEPPMDFDDDIPF

Nucleotide


Download         Length: 537 bp        

>NTDB_id=608534 NMD28_RS20960 WP_000168305.1 4298714..4299250(-) (ssb) [Escherichia coli strain ET120]
ATGGCCAGCAGAGGCGTAAACAAGGTTATTCTCGTTGGTAATCTGGGTCAGGACCCGGAAGTACGCTACATGCCAAATGG
TGGCGCAGTTGCCAACATTACGCTGGCTACTTCCGAATCCTGGCGTGATAAAGCGACCGGCGAGATGAAAGAACAGACTG
AATGGCACCGCGTTGTGCTGTTCGGCAAACTGGCAGAAGTGGCCAGCGAATATCTGCGTAAAGGTTCTCAGGTTTATATC
GAAGGTCAGCTGCGTACCCGTAAATGGACCGATCAATCCGGTCAGGATCGCTACACCACAGAAGTCGTGGTGAACGTTGG
CGGCACCATGCAGATGCTGGGTGGTCGTCAGGGTGGTGGCGCTCCGGCAGGTGGTAATATCGGTGGTGGTCAGCCGCAGG
GCGGTTGGGGTCAGCCTCAGCAGCCGCAGGGTGGCAATCAGTTCAGCGGCGGCGCGCAGTCTCGCCCGCAGCAGTCCGCT
CCGGCAGCGCCGTCTAACGAGCCGCCGATGGACTTTGATGATGACATTCCGTTCTGA

Domains

Predicted by InterProScan.

Single-strand binding protein family (SSB)

(6-112)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB A0A370V115

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  ssb Vibrio cholerae strain A1552

74.444

100

0.753
  ssb Glaesserella parasuis strain SC1401

57.923

100

0.596
  ssb Neisseria meningitidis MC58

48.066

100

0.489
  ssb Neisseria gonorrhoeae MS11

48.066

100

0.489