Detailed information
Bioinformatically predicted
Overview
| Name | ssb | Type | Machinery gene |
| Locus tag | LCE24_RS22405 | Genome accession | NZ_CP083869 |
| Coordinates | 4343755..4344291 (-) | Length | 178 a.a. |
| NCBI ID | WP_000168305.1 | Uniprot ID | A0A9P2PPK2 |
| Organism | Escherichia coli strain NDM6 | ||
| Function | ssDNA binding (predicted from homology) DNA processing |
||
Related MGE
Note: This gene co-localizes with putative mobile genetic elements (MGEs) in the genome predicted by VRprofile2, as detailed below.
Gene-MGE association summary
| MGE type | MGE coordinates | Gene coordinates | Relative position | Distance (bp) |
|---|---|---|---|---|
| Genomic island | 4324791..4367967 | 4343755..4344291 | within | 0 |
Gene organization within MGE regions
Location: 4324791..4367967
| Locus tag | Gene name | Coordinates (strand) | Size (bp) | Protein ID | Product | Description |
|---|---|---|---|---|---|---|
| LCE24_RS22330 (LCE24_22330) | - | 4325568..4325756 (-) | 189 | WP_224452711.1 | hypothetical protein | - |
| LCE24_RS22335 (LCE24_22335) | - | 4326149..4326301 (-) | 153 | WP_224452712.1 | hypothetical protein | - |
| LCE24_RS22340 (LCE24_22340) | - | 4326361..4326858 (-) | 498 | WP_224452713.1 | solute carrier family 23 protein | - |
| LCE24_RS22345 (LCE24_22345) | soxR | 4327370..4327829 (-) | 460 | Protein_4118 | redox-sensitive transcriptional activator SoxR | - |
| LCE24_RS22350 (LCE24_22350) | - | 4327909..4328213 (+) | 305 | Protein_4119 | AraC family transcriptional regulator | - |
| LCE24_RS22355 (LCE24_22355) | - | 4328195..4329739 (-) | 1545 | Protein_4120 | EAL domain-containing protein | - |
| LCE24_RS22360 (LCE24_22360) | yjcB | 4330171..4330454 (+) | 284 | Protein_4121 | YjcB family protein | - |
| LCE24_RS22365 (LCE24_22365) | - | 4330850..4331671 (+) | 822 | WP_001272932.1 | abortive infection system antitoxin AbiGi family protein | - |
| LCE24_RS22370 (LCE24_22370) | avs4 | 4332210..4336973 (-) | 4764 | WP_000240574.1 | AVAST type 4 anti-phage nuclease Avs4 | - |
| LCE24_RS22375 (LCE24_22375) | - | 4337049..4337468 (-) | 420 | WP_001062122.1 | hypothetical protein | - |
| LCE24_RS22380 (LCE24_22380) | - | 4337461..4339119 (-) | 1659 | WP_224434065.1 | integrase | - |
| LCE24_RS22385 (LCE24_22385) | - | 4339129..4339494 (-) | 366 | WP_224434066.1 | hypothetical protein | - |
| LCE24_RS22395 (LCE24_22395) | - | 4340821..4342362 (-) | 1542 | WP_224434067.1 | site-specific integrase | - |
| LCE24_RS22400 (LCE24_22400) | - | 4342349..4343596 (-) | 1248 | WP_000414651.1 | tyrosine-type recombinase/integrase | - |
| LCE24_RS22405 (LCE24_22405) | ssb | 4343755..4344291 (-) | 537 | WP_000168305.1 | single-stranded DNA-binding protein SSB1 | Machinery gene |
| LCE24_RS22410 (LCE24_22410) | uvrA | 4344545..4347367 (+) | 2823 | WP_000357740.1 | excinuclease ABC subunit UvrA | - |
| LCE24_RS22415 (LCE24_22415) | yjbR | 4347402..4347758 (-) | 357 | WP_000155657.1 | MmcQ/YjbR family DNA-binding protein | - |
| LCE24_RS22420 (LCE24_22420) | yjbQ | 4347762..4348178 (-) | 417 | WP_000270375.1 | secondary thiamine-phosphate synthase enzyme YjbQ | - |
| LCE24_RS22425 (LCE24_22425) | aphA | 4348289..4349002 (-) | 714 | WP_001226928.1 | acid phosphatase AphA | - |
| LCE24_RS22430 (LCE24_22430) | yjbS | 4349404..4349607 (+) | 204 | WP_001321562.1 | protein YjbS | - |
| LCE24_RS22435 (LCE24_22435) | tyrB | 4350109..4351302 (-) | 1194 | WP_000486985.1 | aromatic amino acid transaminase | - |
| LCE24_RS22440 (LCE24_22440) | alr | 4351555..4352634 (-) | 1080 | WP_001147328.1 | alanine racemase | - |
| LCE24_RS22445 (LCE24_22445) | dnaB | 4352687..4354102 (-) | 1416 | WP_000918363.1 | replicative DNA helicase | - |
| LCE24_RS22450 (LCE24_22450) | qorA | 4354185..4355168 (+) | 984 | WP_000235508.1 | quinone oxidoreductase | - |
| LCE24_RS22455 (LCE24_22455) | pspG | 4355334..4355576 (-) | 243 | WP_000891404.1 | envelope stress response protein PspG | - |
| LCE24_RS22460 (LCE24_22460) | dusA | 4355710..4356747 (-) | 1038 | WP_001298868.1 | tRNA dihydrouridine(20/20a) synthase DusA | - |
| LCE24_RS22465 (LCE24_22465) | - | 4357110..4358095 (-) | 986 | Protein_4142 | DUF2713 domain-containing protein | - |
| LCE24_RS22470 (LCE24_22470) | zur | 4358413..4358928 (+) | 516 | WP_001295691.1 | zinc uptake transcriptional repressor Zur | - |
| LCE24_RS22475 (LCE24_22475) | yjbJ | 4358970..4359179 (-) | 210 | WP_001030593.1 | CsbD family protein | - |
| LCE24_RS22480 (LCE24_22480) | dinF | 4359295..4360620 (-) | 1326 | WP_001326646.1 | MATE family efflux transporter DinF | - |
| LCE24_RS22485 (LCE24_22485) | lexA | 4360693..4361301 (-) | 609 | WP_000646078.1 | transcriptional repressor LexA | - |
| LCE24_RS22490 (LCE24_22490) | dgkA | 4361411..4361779 (-) | 369 | WP_000002907.1 | diacylglycerol kinase | - |
| LCE24_RS22495 (LCE24_22495) | plsB | 4361950..4364373 (+) | 2424 | WP_000017354.1 | glycerol-3-phosphate 1-O-acyltransferase PlsB | - |
| LCE24_RS22500 (LCE24_22500) | ubiA | 4364528..4365400 (-) | 873 | WP_000455227.1 | 4-hydroxybenzoate octaprenyltransferase | - |
| LCE24_RS22505 (LCE24_22505) | ubiC | 4365413..4365910 (-) | 498 | WP_001326644.1 | chorismate lyase | - |
| LCE24_RS22510 (LCE24_22510) | - | 4366133..4367713 (-) | 1581 | Protein_4151 | SopA family protein | - |
Sequence
Protein
Download Length: 178 a.a. Molecular weight: 18975.00 Da Isoelectric Point: 5.2358
>NTDB_id=608328 LCE24_RS22405 WP_000168305.1 4343755..4344291(-) (ssb) [Escherichia coli strain NDM6]
MASRGVNKVILVGNLGQDPEVRYMPNGGAVANITLATSESWRDKATGEMKEQTEWHRVVLFGKLAEVASEYLRKGSQVYI
EGQLRTRKWTDQSGQDRYTTEVVVNVGGTMQMLGGRQGGGAPAGGNIGGGQPQGGWGQPQQPQGGNQFSGGAQSRPQQSA
PAAPSNEPPMDFDDDIPF
MASRGVNKVILVGNLGQDPEVRYMPNGGAVANITLATSESWRDKATGEMKEQTEWHRVVLFGKLAEVASEYLRKGSQVYI
EGQLRTRKWTDQSGQDRYTTEVVVNVGGTMQMLGGRQGGGAPAGGNIGGGQPQGGWGQPQQPQGGNQFSGGAQSRPQQSA
PAAPSNEPPMDFDDDIPF
Nucleotide
Download Length: 537 bp
>NTDB_id=608328 LCE24_RS22405 WP_000168305.1 4343755..4344291(-) (ssb) [Escherichia coli strain NDM6]
ATGGCCAGCAGAGGCGTAAACAAGGTTATTCTCGTTGGTAATCTGGGTCAGGACCCGGAAGTACGCTACATGCCAAATGG
TGGCGCAGTTGCCAACATTACGCTGGCTACTTCCGAATCCTGGCGTGATAAAGCGACCGGCGAGATGAAAGAACAGACTG
AATGGCACCGCGTTGTGCTGTTCGGCAAACTGGCAGAAGTGGCGAGCGAATATCTGCGTAAAGGTTCTCAGGTTTATATC
GAAGGTCAGCTGCGTACCCGTAAATGGACCGATCAATCCGGTCAGGATCGCTACACCACAGAAGTCGTGGTGAACGTTGG
CGGCACCATGCAGATGCTGGGTGGTCGTCAGGGTGGTGGCGCTCCGGCAGGTGGCAATATCGGTGGTGGTCAGCCGCAGG
GCGGTTGGGGTCAGCCTCAGCAGCCGCAGGGTGGCAATCAGTTCAGCGGCGGCGCGCAGTCTCGCCCGCAGCAGTCCGCT
CCGGCAGCGCCGTCTAACGAGCCGCCGATGGACTTTGATGATGACATTCCGTTCTAG
ATGGCCAGCAGAGGCGTAAACAAGGTTATTCTCGTTGGTAATCTGGGTCAGGACCCGGAAGTACGCTACATGCCAAATGG
TGGCGCAGTTGCCAACATTACGCTGGCTACTTCCGAATCCTGGCGTGATAAAGCGACCGGCGAGATGAAAGAACAGACTG
AATGGCACCGCGTTGTGCTGTTCGGCAAACTGGCAGAAGTGGCGAGCGAATATCTGCGTAAAGGTTCTCAGGTTTATATC
GAAGGTCAGCTGCGTACCCGTAAATGGACCGATCAATCCGGTCAGGATCGCTACACCACAGAAGTCGTGGTGAACGTTGG
CGGCACCATGCAGATGCTGGGTGGTCGTCAGGGTGGTGGCGCTCCGGCAGGTGGCAATATCGGTGGTGGTCAGCCGCAGG
GCGGTTGGGGTCAGCCTCAGCAGCCGCAGGGTGGCAATCAGTTCAGCGGCGGCGCGCAGTCTCGCCCGCAGCAGTCCGCT
CCGGCAGCGCCGTCTAACGAGCCGCCGATGGACTTTGATGATGACATTCCGTTCTAG
3D structure
| Source | ID | Structure |
|---|
Similar proteins
Only experimentally validated proteins are listed.
| Protein | Organism | Identities (%) | Coverage (%) | Ha-value |
|---|---|---|---|---|
| ssb | Vibrio cholerae strain A1552 |
74.444 |
100 |
0.753 |
| ssb | Glaesserella parasuis strain SC1401 |
57.923 |
100 |
0.596 |
| ssb | Neisseria meningitidis MC58 |
48.066 |
100 |
0.489 |
| ssb | Neisseria gonorrhoeae MS11 |
48.066 |
100 |
0.489 |