Detailed information    

insolico Bioinformatically predicted

Overview

Name   comGF   Type   Machinery gene
Locus tag   LB317_RS07295 Genome accession   NZ_CP083805
Coordinates   1581179..1581676 (-) Length   165 a.a.
NCBI ID   WP_072324133.1    Uniprot ID   -
Organism   Staphylococcus argenteus strain 1801221     
Function   dsDNA binding to the cell surface; assembly of the pseudopilus (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 1576179..1586676
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  LB317_RS07270 (LB317_07280) gcvPB 1576342..1577814 (-) 1473 WP_031787254.1 aminomethyl-transferring glycine dehydrogenase subunit GcvPB -
  LB317_RS07275 (LB317_07285) gcvPA 1577807..1579153 (-) 1347 WP_031787255.1 aminomethyl-transferring glycine dehydrogenase subunit GcvPA -
  LB317_RS07280 (LB317_07290) gcvT 1579172..1580263 (-) 1092 WP_000093342.1 glycine cleavage system aminomethyltransferase GcvT -
  LB317_RS07285 (LB317_07295) - 1580420..1580944 (-) 525 WP_031787256.1 shikimate kinase -
  LB317_RS07290 (LB317_07300) - 1580931..1581080 (-) 150 WP_072324192.1 hypothetical protein -
  LB317_RS07295 (LB317_07305) comGF 1581179..1581676 (-) 498 WP_072324133.1 competence type IV pilus minor pilin ComGF Machinery gene
  LB317_RS07300 (LB317_07310) comGE 1581594..1581893 (-) 300 WP_031787259.1 hypothetical protein Machinery gene
  LB317_RS07305 (LB317_07315) comGD 1581880..1582326 (-) 447 WP_072324131.1 competence type IV pilus minor pilin ComGD Machinery gene
  LB317_RS07310 (LB317_07320) comGC 1582304..1582615 (-) 312 WP_000921699.1 competence type IV pilus major pilin ComGC Machinery gene
  LB317_RS07315 (LB317_07325) comGB 1582630..1583700 (-) 1071 WP_031787261.1 competence type IV pilus assembly protein ComGB Machinery gene
  LB317_RS07320 (LB317_07330) comGA 1583672..1584646 (-) 975 WP_031787262.1 competence type IV pilus ATPase ComGA Machinery gene
  LB317_RS07325 (LB317_07335) - 1584698..1585321 (-) 624 WP_031787263.1 MBL fold metallo-hydrolase -
  LB317_RS07330 (LB317_07340) - 1585318..1585647 (-) 330 WP_001018874.1 MTH1187 family thiamine-binding protein -
  LB317_RS07335 (LB317_07345) - 1585647..1586633 (-) 987 WP_000161316.1 ROK family glucokinase -

Sequence

Protein


Download         Length: 165 a.a.        Molecular weight: 19167.98 Da        Isoelectric Point: 10.4043

>NTDB_id=608023 LB317_RS07295 WP_072324133.1 1581179..1581676(-) (comGF) [Staphylococcus argenteus strain 1801221]
MLLSWMISKFVQLQMKILQNLKNVFNIKVKAFSLIEMILAMMAISIILLIVPDTIKISKTFLNESKDLTSIDFEFFARDL
IDDFKKIDKKQIEIKAHSILINKTNEQIEYKFLNNKIIKTVNDKGNITMLNNVLSFSINKDQNATLRISISLKEGELIRK
KIIFV

Nucleotide


Download         Length: 498 bp        

>NTDB_id=608023 LB317_RS07295 WP_072324133.1 1581179..1581676(-) (comGF) [Staphylococcus argenteus strain 1801221]
ATGTTATTAAGTTGGATGATAAGCAAATTTGTGCAATTACAAATGAAAATTCTTCAAAATTTAAAGAATGTATTCAATAT
TAAAGTTAAGGCTTTTTCGTTAATTGAAATGATATTAGCAATGATGGCTATAAGTATTATTTTGCTAATTGTACCTGACA
CGATAAAAATAAGTAAGACGTTTTTAAATGAGAGCAAAGATTTAACGAGTATTGATTTTGAATTCTTTGCAAGAGACTTA
ATTGATGATTTTAAAAAAATAGATAAAAAACAAATTGAAATCAAAGCTCATAGTATACTTATCAATAAAACAAACGAGCA
AATTGAGTATAAATTTTTGAATAATAAAATTATAAAAACAGTTAATGATAAGGGGAATATAACGATGTTAAATAATGTTC
TGTCTTTTTCAATTAATAAAGATCAAAATGCTACTTTGCGAATATCAATATCATTAAAAGAAGGTGAATTAATACGCAAG
AAAATAATATTTGTTTAA

Domains

Predicted by InterproScan.

Putative Competence protein ComGF (ComGF)

(62-156)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comGF Staphylococcus aureus MW2

55.152

100

0.552
  comGF Staphylococcus aureus N315

54.545

100

0.545