Detailed information    

insolico Bioinformatically predicted

Overview

Name   comGA   Type   Machinery gene
Locus tag   LB317_RS07320 Genome accession   NZ_CP083805
Coordinates   1583672..1584646 (-) Length   324 a.a.
NCBI ID   WP_031787262.1    Uniprot ID   A0A7U7JUV7
Organism   Staphylococcus argenteus strain 1801221     
Function   dsDNA binding to the cell surface; assembly of the pseudopilus (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 1578672..1589646
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  LB317_RS07280 (LB317_07290) gcvT 1579172..1580263 (-) 1092 WP_000093342.1 glycine cleavage system aminomethyltransferase GcvT -
  LB317_RS07285 (LB317_07295) - 1580420..1580944 (-) 525 WP_031787256.1 shikimate kinase -
  LB317_RS07290 (LB317_07300) - 1580931..1581080 (-) 150 WP_072324192.1 hypothetical protein -
  LB317_RS07295 (LB317_07305) comGF 1581179..1581676 (-) 498 WP_072324133.1 competence type IV pilus minor pilin ComGF Machinery gene
  LB317_RS07300 (LB317_07310) comGE 1581594..1581893 (-) 300 WP_031787259.1 hypothetical protein Machinery gene
  LB317_RS07305 (LB317_07315) comGD 1581880..1582326 (-) 447 WP_072324131.1 competence type IV pilus minor pilin ComGD Machinery gene
  LB317_RS07310 (LB317_07320) comGC 1582304..1582615 (-) 312 WP_000921699.1 competence type IV pilus major pilin ComGC Machinery gene
  LB317_RS07315 (LB317_07325) comGB 1582630..1583700 (-) 1071 WP_031787261.1 competence type IV pilus assembly protein ComGB Machinery gene
  LB317_RS07320 (LB317_07330) comGA 1583672..1584646 (-) 975 WP_031787262.1 competence type IV pilus ATPase ComGA Machinery gene
  LB317_RS07325 (LB317_07335) - 1584698..1585321 (-) 624 WP_031787263.1 MBL fold metallo-hydrolase -
  LB317_RS07330 (LB317_07340) - 1585318..1585647 (-) 330 WP_001018874.1 MTH1187 family thiamine-binding protein -
  LB317_RS07335 (LB317_07345) - 1585647..1586633 (-) 987 WP_000161316.1 ROK family glucokinase -
  LB317_RS07340 (LB317_07350) - 1586633..1586833 (-) 201 WP_000087563.1 YqgQ family protein -
  LB317_RS07345 (LB317_07355) - 1586814..1588277 (-) 1464 WP_031787264.1 rhomboid family protein -
  LB317_RS07350 (LB317_07360) - 1588289..1588828 (-) 540 WP_072324191.1 5-formyltetrahydrofolate cyclo-ligase -
  LB317_RS07355 (LB317_07365) rpmG 1589040..1589189 (-) 150 WP_001265709.1 50S ribosomal protein L33 -

Sequence

Protein


Download         Length: 324 a.a.        Molecular weight: 36867.03 Da        Isoelectric Point: 9.0234

>NTDB_id=608028 LB317_RS07320 WP_031787262.1 1583672..1584646(-) (comGA) [Staphylococcus argenteus strain 1801221]
MKILFQEIINKAIVMKASDVHFIPVHNEVSIKFRINDNLEQYEEIGNSIYQKLLVYMKFQAGLDVSTQQVAQSGRYSYHF
NKIYFLRISTLPLSLGQESCVIRIVPQYFKQTKSTYKFNDFKHLMNKKQGLLLFSGPTGSGKSTLMYQMVSYANKALNLN
VISIEDPVEMQIPGIVQINVNEKAGINYVNSFKAILRCDPDVILIGEIRDKEVAKCVIQASLSGHLVLTTLHATDCKGAI
LRLLEMGISVQELIQATNLIINQRLVTTIKQQRQLVCEILSQQQLQYFFSHNHSLPTSFKKLETKLDDMTKAGVICESTM
DKYI

Nucleotide


Download         Length: 975 bp        

>NTDB_id=608028 LB317_RS07320 WP_031787262.1 1583672..1584646(-) (comGA) [Staphylococcus argenteus strain 1801221]
ATGAAGATATTATTTCAAGAGATAATCAACAAAGCGATAGTAATGAAAGCGAGTGATGTCCATTTTATTCCTGTTCATAA
TGAAGTGAGTATTAAATTTCGTATAAATGACAATTTGGAACAGTATGAAGAAATTGGAAATAGTATTTATCAAAAGCTAT
TAGTTTATATGAAATTTCAAGCTGGTCTCGATGTATCTACGCAACAAGTTGCTCAGAGTGGTCGTTATAGCTACCATTTT
AATAAAATTTATTTTTTAAGAATTTCAACATTGCCATTATCACTTGGTCAAGAAAGTTGTGTGATAAGAATAGTTCCTCA
ATATTTTAAACAAACTAAATCAACATATAAATTTAATGATTTTAAACATTTAATGAATAAGAAACAAGGCTTATTGTTAT
TTAGTGGTCCGACGGGTTCAGGTAAAAGTACTTTAATGTATCAAATGGTCTCATACGCTAACAAAGCGTTAAACTTAAAT
GTTATATCTATTGAAGACCCAGTAGAAATGCAAATTCCTGGAATAGTTCAAATAAACGTAAATGAAAAAGCTGGGATTAA
CTATGTCAATTCATTTAAAGCGATATTAAGGTGTGACCCAGATGTTATTCTTATAGGGGAAATTAGAGATAAAGAAGTAG
CTAAATGTGTCATCCAAGCAAGTTTAAGTGGTCATCTAGTACTCACTACCTTACATGCAACAGATTGTAAAGGTGCAATT
TTAAGATTACTAGAAATGGGGATTTCAGTACAAGAACTAATACAAGCAACTAATTTAATTATAAATCAAAGACTTGTTAC
TACAATTAAACAGCAACGACAATTAGTGTGTGAAATTTTATCACAACAACAACTTCAGTATTTCTTCTCGCATAATCATT
CATTACCTACCTCATTTAAAAAACTAGAAACAAAGCTTGATGATATGACAAAAGCAGGTGTCATTTGTGAAAGTACAATG
GATAAGTATATTTAA

Domains

Predicted by InterproScan.

Type II/IV secretion system protein (T2SSE)

(8-267)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB A0A7U7JUV7

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comGA Staphylococcus aureus MW2

95.988

100

0.96
  comGA Staphylococcus aureus N315

95.988

100

0.96