Detailed information    

insolico Bioinformatically predicted

Overview

Name   comGE   Type   Machinery gene
Locus tag   LB317_RS07300 Genome accession   NZ_CP083805
Coordinates   1581594..1581893 (-) Length   99 a.a.
NCBI ID   WP_031787259.1    Uniprot ID   A0A7U7PYR8
Organism   Staphylococcus argenteus strain 1801221     
Function   dsDNA binding to the cell surface; assembly of the pseudopilus (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 1576594..1586893
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  LB317_RS07275 (LB317_07285) gcvPA 1577807..1579153 (-) 1347 WP_031787255.1 aminomethyl-transferring glycine dehydrogenase subunit GcvPA -
  LB317_RS07280 (LB317_07290) gcvT 1579172..1580263 (-) 1092 WP_000093342.1 glycine cleavage system aminomethyltransferase GcvT -
  LB317_RS07285 (LB317_07295) - 1580420..1580944 (-) 525 WP_031787256.1 shikimate kinase -
  LB317_RS07290 (LB317_07300) - 1580931..1581080 (-) 150 WP_072324192.1 hypothetical protein -
  LB317_RS07295 (LB317_07305) comGF 1581179..1581676 (-) 498 WP_072324133.1 competence type IV pilus minor pilin ComGF Machinery gene
  LB317_RS07300 (LB317_07310) comGE 1581594..1581893 (-) 300 WP_031787259.1 hypothetical protein Machinery gene
  LB317_RS07305 (LB317_07315) comGD 1581880..1582326 (-) 447 WP_072324131.1 competence type IV pilus minor pilin ComGD Machinery gene
  LB317_RS07310 (LB317_07320) comGC 1582304..1582615 (-) 312 WP_000921699.1 competence type IV pilus major pilin ComGC Machinery gene
  LB317_RS07315 (LB317_07325) comGB 1582630..1583700 (-) 1071 WP_031787261.1 competence type IV pilus assembly protein ComGB Machinery gene
  LB317_RS07320 (LB317_07330) comGA 1583672..1584646 (-) 975 WP_031787262.1 competence type IV pilus ATPase ComGA Machinery gene
  LB317_RS07325 (LB317_07335) - 1584698..1585321 (-) 624 WP_031787263.1 MBL fold metallo-hydrolase -
  LB317_RS07330 (LB317_07340) - 1585318..1585647 (-) 330 WP_001018874.1 MTH1187 family thiamine-binding protein -
  LB317_RS07335 (LB317_07345) - 1585647..1586633 (-) 987 WP_000161316.1 ROK family glucokinase -
  LB317_RS07340 (LB317_07350) - 1586633..1586833 (-) 201 WP_000087563.1 YqgQ family protein -

Sequence

Protein


Download         Length: 99 a.a.        Molecular weight: 11192.35 Da        Isoelectric Point: 9.4577

>NTDB_id=608024 LB317_RS07300 WP_031787259.1 1581594..1581893(-) (comGE) [Staphylococcus argenteus strain 1801221]
MKNYKLKASFFLDSMAAVMLVGLICLVLIPIMNQMRMNFYIEVKSIDASKTILTAASTNSKNELKKGVKIGEYVIKLDDK
QICAITNENSSKFKECIQY

Nucleotide


Download         Length: 300 bp        

>NTDB_id=608024 LB317_RS07300 WP_031787259.1 1581594..1581893(-) (comGE) [Staphylococcus argenteus strain 1801221]
ATGAAAAATTATAAGCTCAAAGCATCATTCTTTTTAGATAGCATGGCAGCAGTTATGTTAGTAGGATTAATCTGTTTAGT
TTTAATACCAATAATGAATCAAATGCGTATGAATTTCTATATTGAAGTAAAAAGTATAGATGCATCAAAGACTATTCTAA
CTGCGGCTTCCACAAATAGTAAAAATGAGCTTAAAAAAGGAGTTAAAATTGGAGAATATGTTATTAAGTTGGATGATAAG
CAAATTTGTGCAATTACAAATGAAAATTCTTCAAAATTTAAAGAATGTATTCAATATTAA

Domains


No domain identified.



Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB A0A7U7PYR8

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comGE Staphylococcus aureus N315

57.576

100

0.576
  comGE Staphylococcus aureus MW2

49.123

100

0.566