Detailed information    

insolico Bioinformatically predicted

Overview

Name   ssb   Type   Machinery gene
Locus tag   K8O61_RS06660 Genome accession   NZ_CP083804
Coordinates   1537955..1538482 (+) Length   175 a.a.
NCBI ID   WP_039005431.1    Uniprot ID   A0A514EAW3
Organism   Xanthomonas cerealis pv. cerealis strain ICMP 16317     
Function   ssDNA binding (predicted from homology)   
DNA processing

Genomic Context

Location: 1532955..1543482
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  K8O61_RS06645 (K8O61_06670) murD 1534102..1535532 (+) 1431 WP_237655830.1 UDP-N-acetylmuramoyl-L-alanine--D-glutamate ligase -
  K8O61_RS06650 (K8O61_06675) - 1535747..1536544 (+) 798 WP_142741905.1 dienelactone hydrolase family protein -
  K8O61_RS06655 (K8O61_06680) - 1536765..1537763 (-) 999 WP_058196258.1 polyprenyl synthetase family protein -
  K8O61_RS06660 (K8O61_06685) ssb 1537955..1538482 (+) 528 WP_039005431.1 single-stranded DNA-binding protein Machinery gene
  K8O61_RS06665 (K8O61_06690) - 1538769..1539026 (-) 258 WP_237655831.1 hypothetical protein -
  K8O61_RS06670 (K8O61_06695) - 1539104..1539469 (-) 366 WP_230812569.1 helix-turn-helix domain-containing protein -
  K8O61_RS06675 (K8O61_06700) - 1539889..1541853 (+) 1965 WP_039005426.1 OPT family oligopeptide transporter -

Sequence

Protein


Download         Length: 175 a.a.        Molecular weight: 18813.75 Da        Isoelectric Point: 5.3242

>NTDB_id=607995 K8O61_RS06660 WP_039005431.1 1537955..1538482(+) (ssb) [Xanthomonas cerealis pv. cerealis strain ICMP 16317]
MARGINKVILVGNLGNDPDTKYTQAGMAITRISLATTSVRKDKDGNQQERTEWHRVVFFGKLGEIAGEYLRKGSSVYVEG
SIRYDKYTGQDGVEKYSTDIVADEMQMLGGREGGGGGAGMGGDRPQRAAAPRQERPNQGGGAQGGGGQDYAPRRQQPAPQ
QSAPMDDFADDDIPF

Nucleotide


Download         Length: 528 bp        

>NTDB_id=607995 K8O61_RS06660 WP_039005431.1 1537955..1538482(+) (ssb) [Xanthomonas cerealis pv. cerealis strain ICMP 16317]
ATGGCCCGCGGCATCAACAAAGTCATCCTCGTCGGCAACCTCGGCAACGACCCCGACACCAAGTACACCCAGGCCGGCAT
GGCGATCACCCGCATCAGCCTGGCCACCACCAGCGTGCGCAAGGACAAGGACGGCAACCAGCAGGAGCGCACCGAATGGC
ACCGCGTGGTGTTCTTCGGCAAGCTCGGCGAGATCGCCGGCGAGTACCTGCGCAAGGGCAGCTCGGTCTATGTCGAAGGC
TCGATCCGCTACGACAAGTACACCGGCCAGGACGGCGTGGAGAAGTACTCCACCGACATCGTCGCCGACGAGATGCAGAT
GCTGGGCGGCCGCGAAGGCGGCGGTGGTGGTGCCGGCATGGGCGGCGATCGCCCGCAGCGTGCTGCCGCGCCGCGCCAGG
AACGCCCGAACCAGGGCGGCGGCGCGCAGGGCGGCGGTGGCCAGGATTATGCGCCGCGCCGGCAGCAGCCGGCGCCGCAG
CAGTCCGCGCCGATGGACGATTTCGCGGACGACGATATCCCGTTCTGA

Domains

Predicted by InterproScan.

Single-strand binding protein family (SSB)

(5-108)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB A0A514EAW3

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  ssb Vibrio cholerae strain A1552

45.263

100

0.491
  ssb Glaesserella parasuis strain SC1401

46.196

100

0.486
  ssb Neisseria gonorrhoeae MS11

46.369

100

0.474
  ssb Neisseria meningitidis MC58

45.604

100

0.474