Detailed information    

insolico Bioinformatically predicted

Overview

Name   ssbA   Type   Machinery gene
Locus tag   LAZ98_RS21250 Genome accession   NZ_CP083764
Coordinates   4160175..4160693 (-) Length   172 a.a.
NCBI ID   WP_004392979.1    Uniprot ID   A0A9Q3LJE1
Organism   Bacillus velezensis strain DMB07     
Function   ssDNA binding (predicted from homology)   
DNA processing

Related MGE

Note: This gene co-localizes with putative mobile genetic elements (MGEs) in the genome predicted by VRprofile2, as detailed below.

Gene-MGE association summary

MGE type MGE coordinates Gene coordinates Relative position Distance (bp)
Prophage 4160175..4169935 4160175..4160693 within 0


Gene organization within MGE regions


Location: 4160175..4169935
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  LAZ98_RS21250 (LAZ98_21250) ssbA 4160175..4160693 (-) 519 WP_004392979.1 single-stranded DNA-binding protein SsbA Machinery gene
  LAZ98_RS21255 (LAZ98_21255) rpsF 4160733..4161020 (-) 288 WP_004392977.1 30S ribosomal protein S6 -
  LAZ98_RS21260 (LAZ98_21260) ychF 4161132..4162232 (-) 1101 WP_004392975.1 redox-regulated ATPase YchF -
  LAZ98_RS21265 (LAZ98_21265) - 4162359..4164362 (-) 2004 WP_224443477.1 molybdopterin-dependent oxidoreductase -
  LAZ98_RS21270 (LAZ98_21270) - 4164409..4164615 (-) 207 WP_004392973.1 DUF951 domain-containing protein -
  LAZ98_RS21275 (LAZ98_21275) - 4164701..4165726 (-) 1026 WP_104843023.1 hypothetical protein -
  LAZ98_RS21280 (LAZ98_21280) - 4165870..4166361 (+) 492 WP_224443478.1 GNAT family N-acetyltransferase -
  LAZ98_RS21285 (LAZ98_21285) yyaC 4166536..4167150 (+) 615 WP_004392969.1 spore protease YyaC -
  LAZ98_RS21290 (LAZ98_21290) - 4167180..4168031 (-) 852 WP_004392966.1 ParB/RepB/Spo0J family partition protein -
  LAZ98_RS21295 (LAZ98_21295) soj 4168024..4168785 (-) 762 WP_007409899.1 sporulation initiation inhibitor protein Soj -
  LAZ98_RS21300 (LAZ98_21300) noc 4169084..4169935 (-) 852 WP_007615083.1 nucleoid occlusion protein -

Sequence

Protein


Download         Length: 172 a.a.        Molecular weight: 18745.31 Da        Isoelectric Point: 4.7621

>NTDB_id=607865 LAZ98_RS21250 WP_004392979.1 4160175..4160693(-) (ssbA) [Bacillus velezensis strain DMB07]
MLNRVVLVGRLTKDPELRYTPSGAAVATFTLAVNRTFTNQSGEREADFINCVTWRRQAENVANFLKKGSLAGVDGRLQTR
NYENQQGQRVFVTEVQAESVQFLEPKNSGGSGSGGYNEGNSGGGQYFGGGQNDNPFGGNQNNQRRNQGNSFNDDPFANDG
KPIDISDDDLPF

Nucleotide


Download         Length: 519 bp        

>NTDB_id=607865 LAZ98_RS21250 WP_004392979.1 4160175..4160693(-) (ssbA) [Bacillus velezensis strain DMB07]
ATGCTTAACCGAGTTGTATTAGTCGGAAGACTGACAAAAGACCCAGAGCTTCGTTATACGCCAAGCGGTGCGGCTGTCGC
CACGTTTACTCTTGCTGTGAATCGTACATTCACGAACCAGTCCGGAGAACGTGAAGCCGATTTCATTAATTGTGTCACTT
GGAGAAGACAAGCCGAAAACGTTGCAAACTTTCTTAAAAAAGGAAGCCTTGCCGGCGTAGACGGCCGACTCCAGACAAGA
AATTATGAAAACCAGCAGGGACAGCGTGTCTTCGTGACAGAAGTCCAAGCTGAAAGTGTTCAATTTCTTGAGCCTAAAAA
CAGCGGCGGTTCTGGATCAGGCGGATACAACGAAGGAAACAGCGGCGGAGGCCAATACTTTGGCGGAGGCCAAAATGATA
ATCCGTTCGGCGGAAATCAGAACAACCAGAGACGAAATCAAGGGAACAGCTTTAATGATGATCCATTTGCCAACGACGGC
AAGCCGATTGACATCTCGGATGATGATCTTCCGTTCTAA

Domains

Predicted by InterproScan.

Single-strand binding protein family (SSB)

(2-103)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  ssbA Bacillus subtilis subsp. subtilis str. 168

98.837

100

0.988
  ssb Latilactobacillus sakei subsp. sakei 23K

58.757

100

0.605
  ssbB Bacillus subtilis subsp. subtilis str. 168

64.151

61.628

0.395
  ssb Glaesserella parasuis strain SC1401

35.519

100

0.378