Detailed information    

insolico Bioinformatically predicted

Overview

Name   ssb   Type   Machinery gene
Locus tag   NMD41_RS20940 Genome accession   NZ_CP100954
Coordinates   4235502..4236038 (-) Length   178 a.a.
NCBI ID   WP_000168305.1    Uniprot ID   A0A370V115
Organism   Escherichia coli strain ET474     
Function   ssDNA binding (predicted from homology)   
DNA processing

Genomic Context

Location: 4230502..4241038
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  NMD41_RS20920 (NMD41_20775) soxR 4232230..4232694 (-) 465 WP_000412428.1 redox-sensitive transcriptional activator SoxR -
  NMD41_RS20925 (NMD41_20780) soxS 4232780..4233103 (+) 324 WP_000019358.1 superoxide response transcriptional regulator SoxS -
  NMD41_RS20930 (NMD41_20785) pdeC 4233106..4234692 (-) 1587 WP_053270536.1 c-di-GMP phosphodiesterase PdeC -
  NMD41_RS20935 (NMD41_20790) yjcB 4235122..4235403 (+) 282 WP_001295689.1 YjcB family protein -
  NMD41_RS20940 (NMD41_20795) ssb 4235502..4236038 (-) 537 WP_000168305.1 single-stranded DNA-binding protein SSB1 Machinery gene
  NMD41_RS20945 (NMD41_20800) uvrA 4236292..4239114 (+) 2823 WP_000357740.1 excinuclease ABC subunit UvrA Machinery gene
  NMD41_RS20950 (NMD41_20805) yjbR 4239149..4239505 (-) 357 WP_000155657.1 MmcQ/YjbR family DNA-binding protein -
  NMD41_RS20955 (NMD41_20810) yjbQ 4239509..4239925 (-) 417 WP_000270375.1 secondary thiamine-phosphate synthase enzyme YjbQ -
  NMD41_RS20960 (NMD41_20815) aphA 4240036..4240749 (-) 714 WP_001395166.1 acid phosphatase AphA -

Sequence

Protein


Download         Length: 178 a.a.        Molecular weight: 18975.00 Da        Isoelectric Point: 5.2358

>NTDB_id=607724 NMD41_RS20940 WP_000168305.1 4235502..4236038(-) (ssb) [Escherichia coli strain ET474]
MASRGVNKVILVGNLGQDPEVRYMPNGGAVANITLATSESWRDKATGEMKEQTEWHRVVLFGKLAEVASEYLRKGSQVYI
EGQLRTRKWTDQSGQDRYTTEVVVNVGGTMQMLGGRQGGGAPAGGNIGGGQPQGGWGQPQQPQGGNQFSGGAQSRPQQSA
PAAPSNEPPMDFDDDIPF

Nucleotide


Download         Length: 537 bp        

>NTDB_id=607724 NMD41_RS20940 WP_000168305.1 4235502..4236038(-) (ssb) [Escherichia coli strain ET474]
ATGGCCAGCAGAGGCGTAAACAAGGTTATTCTCGTTGGTAATCTGGGTCAGGACCCGGAAGTACGCTACATGCCAAATGG
TGGCGCAGTTGCCAACATTACGCTGGCTACTTCCGAATCCTGGCGTGATAAAGCGACCGGCGAGATGAAAGAACAGACTG
AATGGCACCGCGTTGTGCTGTTCGGCAAACTGGCAGAAGTGGCGAGCGAATATCTGCGTAAAGGTTCTCAGGTTTATATC
GAAGGTCAGCTGCGTACCCGTAAATGGACCGATCAATCCGGTCAGGATCGCTACACCACAGAAGTCGTGGTGAACGTTGG
CGGCACCATGCAGATGCTGGGTGGTCGTCAGGGTGGTGGCGCTCCGGCAGGTGGCAATATCGGTGGTGGTCAGCCGCAGG
GCGGTTGGGGTCAGCCTCAGCAGCCGCAGGGTGGCAATCAGTTCAGCGGCGGCGCGCAGTCTCGCCCGCAGCAGTCCGCT
CCGGCAGCGCCGTCTAACGAGCCGCCGATGGACTTTGATGATGACATTCCGTTCTGA

Domains

Predicted by InterProScan.

Single-strand binding protein family (SSB)

(6-112)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB A0A370V115

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  ssb Vibrio cholerae strain A1552

74.444

100

0.753
  ssb Glaesserella parasuis strain SC1401

57.923

100

0.596
  ssb Neisseria meningitidis MC58

48.066

100

0.489
  ssb Neisseria gonorrhoeae MS11

48.066

100

0.489