Detailed information    

insolico Bioinformatically predicted

Overview

Name   ssbA   Type   Machinery gene
Locus tag   K8M08_RS13750 Genome accession   NZ_CP083749
Coordinates   2674760..2675281 (+) Length   173 a.a.
NCBI ID   WP_000981967.1    Uniprot ID   A0A063CSK8
Organism   Bacillus sp. CRB-7     
Function   ssDNA binding (predicted from homology)   
DNA processing

Genomic Context

Location: 2669760..2680281
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  K8M08_RS13720 (K8M08_13720) spo0J 2670209..2671060 (+) 852 WP_001051839.1 stage 0 sporulation protein Spo0J -
  K8M08_RS13725 (K8M08_13725) yyaC 2671081..2671677 (-) 597 WP_001020718.1 spore protease YyaC -
  K8M08_RS13730 (K8M08_13730) - 2671936..2672817 (+) 882 WP_000365105.1 mechanosensitive ion channel family protein -
  K8M08_RS13735 (K8M08_13735) - 2672838..2673035 (+) 198 WP_000436051.1 DUF951 domain-containing protein -
  K8M08_RS13740 (K8M08_13740) ychF 2673151..2674251 (+) 1101 WP_000524669.1 redox-regulated ATPase YchF -
  K8M08_RS13745 (K8M08_13745) rpsF 2674443..2674733 (+) 291 WP_001233780.1 30S ribosomal protein S6 -
  K8M08_RS13750 (K8M08_13750) ssbA 2674760..2675281 (+) 522 WP_000981967.1 single-stranded DNA-binding protein Machinery gene
  K8M08_RS13755 (K8M08_13755) rpsR 2675327..2675560 (+) 234 WP_000918873.1 30S ribosomal protein S18 -
  K8M08_RS13760 (K8M08_13760) - 2675641..2676576 (+) 936 WP_001246426.1 YybS family protein -
  K8M08_RS13765 (K8M08_13765) - 2676655..2678628 (+) 1974 WP_001113894.1 DHH family phosphoesterase -
  K8M08_RS13770 (K8M08_13770) rplI 2678625..2679071 (+) 447 WP_000864230.1 50S ribosomal protein L9 -

Sequence

Protein


Download         Length: 173 a.a.        Molecular weight: 18823.61 Da        Isoelectric Point: 4.9327

>NTDB_id=607650 K8M08_RS13750 WP_000981967.1 2674760..2675281(+) (ssbA) [Bacillus sp. CRB-7]
MMNRVILVGRLTKDPDLRYTPNGVAVATFTLAVNRAFANQQGEREADFINCVIWRKQAENVANYLKKGSLAGVDGRLQTR
NYEGQDGKRVYVTEVLAESVQFLEPRNGGGEQRGSFNQQPSGAGFGNQSSNPFGQSSNSGNQGNQGNSGFTKNDDPFSNV
GQPIDISDDDLPF

Nucleotide


Download         Length: 522 bp        

>NTDB_id=607650 K8M08_RS13750 WP_000981967.1 2674760..2675281(+) (ssbA) [Bacillus sp. CRB-7]
TTGATGAATCGTGTTATCCTCGTTGGTCGTTTAACTAAGGACCCTGACTTACGTTACACGCCCAATGGTGTTGCAGTAGC
TACTTTTACGTTAGCTGTGAATCGCGCATTTGCCAATCAACAAGGTGAGCGTGAAGCTGACTTTATTAATTGTGTAATAT
GGCGTAAACAAGCAGAAAACGTAGCAAATTATTTGAAAAAAGGTAGCTTAGCAGGCGTAGATGGGCGTCTTCAAACTCGT
AATTACGAGGGACAAGATGGTAAACGTGTATACGTAACAGAAGTTCTTGCGGAAAGCGTACAATTTTTAGAGCCGCGTAA
TGGCGGTGGGGAGCAACGTGGTTCATTTAATCAGCAACCATCAGGAGCTGGTTTCGGTAACCAAAGCTCTAACCCATTTG
GTCAATCTAGTAATTCAGGCAACCAAGGTAACCAAGGAAACTCTGGATTTACAAAGAATGACGATCCATTTTCAAATGTA
GGTCAACCGATCGACATTTCTGACGACGATTTACCGTTCTAA

Domains

Predicted by InterproScan.

Single-strand binding protein family (SSB)

(2-103)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB A0A063CSK8

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  ssbA Bacillus subtilis subsp. subtilis str. 168

72.316

100

0.74
  ssb Latilactobacillus sakei subsp. sakei 23K

58.286

100

0.59
  ssbB Bacillus subtilis subsp. subtilis str. 168

65.094

61.272

0.399
  ssb Glaesserella parasuis strain SC1401

36.264

100

0.382