Detailed information    

insolico Bioinformatically predicted

Overview

Name   ssb   Type   Machinery gene
Locus tag   LA331_RS11655 Genome accession   NZ_CP083658
Coordinates   2382301..2382885 (+) Length   194 a.a.
NCBI ID   WP_005232624.1    Uniprot ID   -
Organism   Acinetobacter variabilis strain FDAARGOS_1487     
Function   ssDNA binding (predicted from homology)   
DNA processing

Genomic Context

Location: 2377301..2387885
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  LA331_RS11640 (LA331_11640) tenA 2378745..2379416 (-) 672 WP_005232629.1 thiaminase II -
  LA331_RS11645 (LA331_11645) - 2379639..2380730 (+) 1092 WP_005232627.1 DUF475 domain-containing protein -
  LA331_RS11650 (LA331_11650) - 2380885..2382249 (+) 1365 WP_005232626.1 MFS transporter -
  LA331_RS11655 (LA331_11655) ssb 2382301..2382885 (+) 585 WP_005232624.1 single-stranded DNA-binding protein Machinery gene
  LA331_RS11660 (LA331_11660) - 2382955..2383419 (-) 465 WP_005232622.1 hotdog fold domain-containing protein -
  LA331_RS11665 (LA331_11665) - 2383558..2384202 (+) 645 WP_005232620.1 TetR/AcrR family transcriptional regulator -
  LA331_RS11670 (LA331_11670) ahpC 2384354..2384917 (+) 564 WP_005232609.1 alkyl hydroperoxide reductase subunit C -
  LA331_RS11675 (LA331_11675) - 2385164..2386042 (+) 879 WP_005232608.1 pirin family protein -
  LA331_RS11680 (LA331_11680) - 2386456..2387763 (+) 1308 WP_004781572.1 FAD-dependent oxidoreductase -

Sequence

Protein


Download         Length: 194 a.a.        Molecular weight: 21239.95 Da        Isoelectric Point: 6.4819

>NTDB_id=607196 LA331_RS11655 WP_005232624.1 2382301..2382885(+) (ssb) [Acinetobacter variabilis strain FDAARGOS_1487]
MRGVNKVILVGTLGRDPETKTFPNGGSLTQFSIATSDSWTDKNTGERKEQTEWHRIVLHNRLGEIAQQYLRKGSKVYIEG
SLRTRQWTDQSGQERYTTEIRGEQMQMLDSGRPQGEQGDNGFNQPRFNNNNQGGGYGNNPQGSYGSAPQQGGFNNNQGSG
YGNNNQNNQGGYAPKSAPAPVAAPAADLDDDLPF

Nucleotide


Download         Length: 585 bp        

>NTDB_id=607196 LA331_RS11655 WP_005232624.1 2382301..2382885(+) (ssb) [Acinetobacter variabilis strain FDAARGOS_1487]
ATGCGTGGTGTTAATAAGGTCATTTTAGTTGGTACTTTAGGTCGAGATCCTGAGACCAAAACTTTCCCAAATGGTGGTTC
TCTCACTCAATTCTCTATCGCAACCAGCGATTCATGGACTGATAAAAATACGGGCGAACGTAAAGAGCAAACCGAATGGC
ACCGTATTGTGCTGCATAACCGTTTAGGTGAAATTGCACAGCAATATCTGCGCAAAGGTTCTAAAGTTTATATCGAAGGT
TCATTACGTACCCGTCAATGGACAGATCAAAGCGGTCAAGAACGCTACACAACGGAAATCCGTGGTGAGCAAATGCAAAT
GCTGGATTCTGGTCGTCCACAAGGCGAGCAAGGCGATAACGGTTTTAACCAGCCACGTTTTAATAACAATAACCAGGGTG
GCGGTTATGGCAATAATCCACAAGGTAGTTATGGCTCAGCGCCTCAGCAAGGCGGTTTTAATAATAATCAGGGCAGTGGT
TATGGCAACAATAACCAAAATAACCAGGGTGGTTATGCGCCGAAGTCTGCACCTGCTCCAGTAGCAGCACCGGCAGCCGA
TCTGGATGATGATCTTCCGTTTTAA

Domains

Predicted by InterproScan.

Single-strand binding protein family (SSB)

(4-108)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  ssb Glaesserella parasuis strain SC1401

50.754

100

0.521
  ssb Vibrio cholerae strain A1552

43.5

100

0.448
  ssb Neisseria meningitidis MC58

40.816

100

0.412
  ssb Neisseria gonorrhoeae MS11

39.796

100

0.402