Detailed information    

insolico Bioinformatically predicted

Overview

Name   ssb   Type   Machinery gene
Locus tag   LA322_RS15865 Genome accession   NZ_CP083628
Coordinates   3412961..3413488 (+) Length   175 a.a.
NCBI ID   WP_036934577.1    Uniprot ID   -
Organism   Proteus vulgaris strain FDAARGOS_1507     
Function   ssDNA binding (predicted from homology)   
DNA processing

Genomic Context

Location: 3407961..3418488
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  LA322_RS15860 (LA322_15860) uvrA 3409874..3412708 (-) 2835 WP_036934575.1 excinuclease ABC subunit UvrA -
  LA322_RS15865 (LA322_15865) ssb 3412961..3413488 (+) 528 WP_036934577.1 single-stranded DNA-binding protein SSB1 Machinery gene
  LA322_RS15870 (LA322_15870) zur 3413764..3414294 (+) 531 WP_036934579.1 zinc uptake transcriptional repressor Zur -
  LA322_RS15875 (LA322_15875) lexA 3414404..3415015 (-) 612 WP_036934582.1 transcriptional repressor LexA -
  LA322_RS15880 (LA322_15880) - 3415143..3415514 (-) 372 WP_036934584.1 diacylglycerol kinase -
  LA322_RS15885 (LA322_15885) plsB 3415645..3418128 (+) 2484 WP_036934586.1 glycerol-3-phosphate 1-O-acyltransferase PlsB -

Sequence

Protein


Download         Length: 175 a.a.        Molecular weight: 18948.99 Da        Isoelectric Point: 4.9468

>NTDB_id=606879 LA322_RS15865 WP_036934577.1 3412961..3413488(+) (ssb) [Proteus vulgaris strain FDAARGOS_1507]
MASRGVNKVILIGNLGQDPEIRYMPSGGAVANLTLATSESWRDKQTGEMKEKTEWHRVVIFGKLAEIAGEYLRKGSQVYI
EGQLQTRKWQDQSGQDRYSTEVVVNIGGTMQMLGGRGGQDNAPSQGGQGGWGQPQQPQASQQFSGGAQSRPAQQPAATPA
PSNEPPMDFDDDIPF

Nucleotide


Download         Length: 528 bp        

>NTDB_id=606879 LA322_RS15865 WP_036934577.1 3412961..3413488(+) (ssb) [Proteus vulgaris strain FDAARGOS_1507]
ATGGCGAGCAGAGGCGTAAACAAAGTTATTCTTATCGGTAATTTAGGGCAGGATCCGGAAATCCGTTATATGCCAAGTGG
TGGTGCAGTTGCTAACCTAACACTGGCAACATCAGAAAGCTGGCGCGATAAACAAACCGGTGAAATGAAAGAAAAAACCG
AGTGGCACCGTGTGGTAATTTTCGGAAAATTAGCGGAAATTGCAGGCGAATATCTGCGTAAAGGTTCACAAGTGTATATC
GAAGGTCAATTACAAACACGTAAATGGCAAGATCAAAGCGGCCAAGACAGATATAGCACTGAAGTTGTCGTTAACATCGG
CGGCACAATGCAGATGTTAGGTGGCCGTGGTGGTCAAGATAATGCACCTTCACAAGGTGGTCAAGGCGGTTGGGGTCAAC
CACAACAGCCACAAGCATCACAACAATTTAGCGGTGGCGCACAATCTCGCCCAGCACAACAACCCGCAGCAACGCCAGCG
CCAAGCAATGAACCACCAATGGATTTTGATGACGATATTCCGTTCTAA

Domains

Predicted by InterproScan.

Single-strand binding protein family (SSB)

(6-112)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  ssb Vibrio cholerae strain A1552

72.432

100

0.766
  ssb Glaesserella parasuis strain SC1401

56.757

100

0.6
  ssb Neisseria meningitidis MC58

47.753

100

0.486
  ssb Neisseria gonorrhoeae MS11

47.753

100

0.486