Detailed information    

insolico Bioinformatically predicted

Overview

Name   comFC/cflB   Type   Machinery gene
Locus tag   LA346_RS04670 Genome accession   NZ_CP083627
Coordinates   876050..876712 (-) Length   220 a.a.
NCBI ID   WP_000649971.1    Uniprot ID   A0A0B7MFB3
Organism   Streptococcus pneumoniae strain FDAARGOS_1508     
Function   ssDNA transport into the cell (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 871050..881712
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  LA346_RS04645 (LA346_04645) - 871200..871466 (-) 267 WP_001278167.1 Veg family protein -
  LA346_RS04650 (LA346_04650) dnaB 871468..872820 (-) 1353 WP_224208833.1 replicative DNA helicase -
  LA346_RS04655 (LA346_04655) rplI 872864..873316 (-) 453 WP_000864220.1 50S ribosomal protein L9 -
  LA346_RS04660 (LA346_04660) - 873313..875286 (-) 1974 WP_000715116.1 DHH family phosphoesterase -
  LA346_RS04665 (LA346_04665) hpf 875422..875970 (-) 549 WP_000599107.1 ribosome hibernation-promoting factor, HPF/YfiA family -
  LA346_RS04670 (LA346_04670) comFC/cflB 876050..876712 (-) 663 WP_000649971.1 ComF family protein Machinery gene
  LA346_RS04675 (LA346_04675) comFA/cflA 876709..878007 (-) 1299 WP_000867591.1 DEAD/DEAH box helicase Machinery gene
  LA346_RS04680 (LA346_04680) - 878063..878698 (+) 636 WP_000395738.1 YigZ family protein -
  LA346_RS04685 (LA346_04685) cysK 878983..879903 (+) 921 WP_000029866.1 cysteine synthase A -
  LA346_RS04690 (LA346_04690) - 879978..880516 (-) 539 Protein_893 transposase -
  LA346_RS04695 (LA346_04695) - 880489..880797 (+) 309 Protein_894 transposase -
  LA346_RS04700 (LA346_04700) tnpB 880938..881153 (-) 216 WP_000376909.1 IS66 family insertion sequence element accessory protein TnpB -

Sequence

Protein


Download         Length: 220 a.a.        Molecular weight: 25241.10 Da        Isoelectric Point: 7.3688

>NTDB_id=606831 LA346_RS04670 WP_000649971.1 876050..876712(-) (comFC/cflB) [Streptococcus pneumoniae strain FDAARGOS_1508]
MKCLLCGQTMKTVLTFSSLLLLRNDDSCLCSDCDSTFERIGEENCPNCMKTELSTKCQDCQLWCKEGVEVSHRAIFTYNQ
AMKDFFSRYKFDGDFLLRKVFASFLSEELKKYKEYQFVVIPLSPDRYANRGFNQVEGLVEAAGFEYLDLLEKREERASSS
KNRSERLGTELPFFIKSGVTIPKKILLIDDIYTTGATINRVKKLLEEAGAKDVKTFSLVR

Nucleotide


Download         Length: 663 bp        

>NTDB_id=606831 LA346_RS04670 WP_000649971.1 876050..876712(-) (comFC/cflB) [Streptococcus pneumoniae strain FDAARGOS_1508]
ATGAAGTGCTTGTTATGTGGGCAGACTATGAAGACTGTTTTAACTTTTAGTAGTCTCTTACTTCTGAGGAATGATGACTC
TTGTCTTTGTTCAGACTGTGATTCTACTTTTGAAAGAATTGGGGAAGAGAACTGTCCAAATTGTATGAAAACAGAGTTGT
CAACAAAGTGTCAAGATTGTCAACTTTGGTGTAAAGAGGGAGTTGAAGTCAGTCATAGAGCGATTTTTACTTACAATCAA
GCTATGAAGGATTTTTTCAGTCGGTATAAGTTTGATGGAGACTTCCTGTTAAGAAAAGTTTTCGCTTCATTTTTAAGTGA
GGAGTTGAAAAAGTACAAAGAGTATCAATTTGTTGTAATTCCCCTAAGTCCTGATAGATATGCTAATAGAGGATTTAATC
AGGTTGAGGGCTTGGTAGAGGCAGCAGGCTTTGAGTATCTGGATTTATTAGAGAAAAGAGAAGAGAGAGCCAGTTCTTCT
AAAAATCGTTCAGAGCGCTTGGGGACAGAACTTCCTTTCTTTATTAAAAGTGGAGTCACTATTCCTAAAAAAATCCTACT
TATAGATGATATCTATACTACAGGAGCAACTATAAATCGTGTTAAGAAACTGTTGGAAGAAGCTGGTGCTAAGGATGTAA
AAACATTTTCCCTTGTAAGATGA

Domains

Predicted by InterproScan.

Phosphoribosyl transferase domain (Pribosyltran)

(153-219)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB A0A0B7MFB3

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comFC/cflB Streptococcus pneumoniae TIGR4

100

100

1
  comFC/cflB Streptococcus pneumoniae Rx1

99.545

100

0.995
  comFC/cflB Streptococcus pneumoniae D39

99.545

100

0.995
  comFC/cflB Streptococcus pneumoniae R6

99.545

100

0.995
  comFC/cflB Streptococcus mitis NCTC 12261

91.818

100

0.918
  comFC/cflB Streptococcus mitis SK321

91.364

100

0.914