Detailed information    

insolico Bioinformatically predicted

Overview

Name   ssb   Type   Machinery gene
Locus tag   LA358_RS04480 Genome accession   NZ_CP083612
Coordinates   924770..925336 (-) Length   188 a.a.
NCBI ID   WP_026456622.1    Uniprot ID   A0A175VIV7
Organism   Aeromonas enteropelogenes strain FDAARGOS_1536     
Function   ssDNA binding (predicted from homology)   
DNA processing

Genomic Context

Location: 919770..930336
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  LA358_RS04460 (LA358_04460) cspA 920500..920712 (-) 213 WP_026458175.1 RNA chaperone/antiterminator CspA -
  LA358_RS04465 (LA358_04465) - 921205..922245 (-) 1041 WP_224210912.1 IS481 family transposase -
  LA358_RS04470 (LA358_04470) - 922377..923279 (-) 903 WP_042029080.1 cation diffusion facilitator family transporter -
  LA358_RS20045 - 923701..923826 (+) 126 WP_019445191.1 hypothetical protein -
  LA358_RS04475 (LA358_04475) - 923901..924644 (-) 744 WP_224210913.1 substrate-binding periplasmic protein -
  LA358_RS04480 (LA358_04480) ssb 924770..925336 (-) 567 WP_026456622.1 single-stranded DNA-binding protein Machinery gene
  LA358_RS04485 (LA358_04485) uvrA 925718..928543 (+) 2826 WP_224210914.1 excinuclease ABC subunit UvrA -

Sequence

Protein


Download         Length: 188 a.a.        Molecular weight: 20858.29 Da        Isoelectric Point: 5.9301

>NTDB_id=606626 LA358_RS04480 WP_026456622.1 924770..925336(-) (ssb) [Aeromonas enteropelogenes strain FDAARGOS_1536]
MASRGINKVILIGNLGQDPEVRYMPSGGAVTNITLATSETWRDKQTGEQKERTEWHRVVFMGKLAEVAGEYLKKGSQVYV
EGKLQTRKWQDQSGQERYTTEVLVDSFSGVMQMLGGRPQGAGQGMGGQNQGGWGQPQQAMQQPMNQQRPAPQQNMQQQGG
YGRPAQQPQSAPPVYNEPPMDFDDDIPF

Nucleotide


Download         Length: 567 bp        

>NTDB_id=606626 LA358_RS04480 WP_026456622.1 924770..925336(-) (ssb) [Aeromonas enteropelogenes strain FDAARGOS_1536]
ATGGCCAGTCGAGGCATCAATAAAGTCATTCTGATCGGTAACCTCGGGCAAGACCCGGAAGTACGCTACATGCCGAGTGG
CGGTGCTGTGACCAACATTACCCTGGCCACCTCTGAAACCTGGCGCGACAAGCAAACCGGCGAGCAGAAAGAGCGCACCG
AATGGCACCGTGTCGTCTTCATGGGCAAGCTGGCCGAAGTCGCCGGCGAATACCTGAAAAAGGGTTCCCAGGTCTATGTG
GAAGGCAAGCTGCAAACCCGCAAATGGCAGGATCAGAGCGGCCAGGAACGCTACACCACCGAAGTGCTGGTCGACAGCTT
CAGCGGCGTGATGCAGATGCTGGGTGGCCGTCCGCAAGGCGCCGGTCAGGGTATGGGTGGCCAGAACCAGGGTGGCTGGG
GCCAGCCGCAGCAAGCCATGCAGCAGCCGATGAACCAGCAGCGTCCCGCTCCGCAGCAGAACATGCAGCAGCAGGGTGGT
TACGGTCGTCCAGCTCAGCAGCCCCAGTCAGCTCCGCCGGTCTATAACGAGCCGCCGATGGATTTCGACGACGATATTCC
GTTCTAA

Domains

Predicted by InterproScan.

Single-strand binding protein family (SSB)

(6-107)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB A0A175VIV7

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  ssb Vibrio cholerae strain A1552

68.912

100

0.707
  ssb Glaesserella parasuis strain SC1401

53.763

98.936

0.532
  ssb Neisseria gonorrhoeae MS11

48.913

97.872

0.479
  ssb Neisseria meningitidis MC58

48.37

97.872

0.473