Detailed information    

insolico Bioinformatically predicted

Overview

Name   ssb   Type   Machinery gene
Locus tag   LA372_RS21220 Genome accession   NZ_CP083585
Coordinates   4388292..4388828 (-) Length   178 a.a.
NCBI ID   WP_000168305.1    Uniprot ID   A0A9P2PPK2
Organism   Escherichia coli strain ECNB21-M121     
Function   ssDNA binding (predicted from homology)   
DNA processing

Genomic Context

Location: 4383292..4393828
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  LA372_RS21200 (LA372_21215) soxR 4385021..4385485 (-) 465 WP_000412435.1 redox-sensitive transcriptional activator SoxR -
  LA372_RS21205 (LA372_21220) soxS 4385571..4385894 (+) 324 WP_000019358.1 superoxide response transcriptional regulator SoxS -
  LA372_RS21210 (LA372_21225) pdeC 4385897..4387483 (-) 1587 WP_104773243.1 c-di-GMP phosphodiesterase PdeC -
  LA372_RS21215 (LA372_21230) yjcB 4387912..4388193 (+) 282 WP_047624648.1 YjcB family protein -
  LA372_RS21220 (LA372_21235) ssb 4388292..4388828 (-) 537 WP_000168305.1 single-stranded DNA-binding protein SSB1 Machinery gene
  LA372_RS21225 (LA372_21240) uvrA 4389082..4391904 (+) 2823 WP_000357740.1 excinuclease ABC subunit UvrA -
  LA372_RS21230 (LA372_21245) yjbR 4391939..4392295 (-) 357 WP_000155657.1 MmcQ/YjbR family DNA-binding protein -
  LA372_RS21235 (LA372_21250) yjbQ 4392299..4392715 (-) 417 WP_000270375.1 secondary thiamine-phosphate synthase enzyme YjbQ -
  LA372_RS21240 (LA372_21255) aphA 4392826..4393539 (-) 714 WP_001226928.1 acid phosphatase AphA -

Sequence

Protein


Download         Length: 178 a.a.        Molecular weight: 18975.00 Da        Isoelectric Point: 5.2358

>NTDB_id=606371 LA372_RS21220 WP_000168305.1 4388292..4388828(-) (ssb) [Escherichia coli strain ECNB21-M121]
MASRGVNKVILVGNLGQDPEVRYMPNGGAVANITLATSESWRDKATGEMKEQTEWHRVVLFGKLAEVASEYLRKGSQVYI
EGQLRTRKWTDQSGQDRYTTEVVVNVGGTMQMLGGRQGGGAPAGGNIGGGQPQGGWGQPQQPQGGNQFSGGAQSRPQQSA
PAAPSNEPPMDFDDDIPF

Nucleotide


Download         Length: 537 bp        

>NTDB_id=606371 LA372_RS21220 WP_000168305.1 4388292..4388828(-) (ssb) [Escherichia coli strain ECNB21-M121]
ATGGCCAGCAGAGGCGTAAACAAGGTTATTCTCGTTGGTAATCTGGGTCAGGACCCGGAAGTACGCTACATGCCAAATGG
TGGCGCAGTTGCCAACATTACGCTGGCTACTTCCGAATCCTGGCGTGATAAAGCGACCGGCGAGATGAAAGAGCAGACTG
AATGGCACCGCGTTGTGCTGTTCGGCAAACTGGCAGAAGTAGCCAGCGAATATCTGCGTAAAGGTTCTCAGGTTTATATC
GAAGGTCAGCTGCGTACCCGCAAATGGACCGATCAATCCGGTCAGGATCGCTACACCACAGAAGTCGTGGTGAACGTTGG
CGGCACTATGCAGATGCTGGGTGGTCGTCAGGGTGGTGGCGCTCCTGCAGGTGGCAATATCGGTGGTGGTCAGCCGCAGG
GCGGTTGGGGTCAGCCTCAGCAGCCGCAGGGTGGCAATCAGTTCAGCGGCGGCGCGCAGTCTCGCCCGCAGCAGTCCGCT
CCGGCAGCGCCGTCAAATGAGCCGCCGATGGACTTTGATGACGATATTCCGTTCTGA

Domains

Predicted by InterproScan.

Single-strand binding protein family (SSB)

(6-112)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  ssb Vibrio cholerae strain A1552

74.444

100

0.753
  ssb Glaesserella parasuis strain SC1401

57.923

100

0.596
  ssb Neisseria meningitidis MC58

48.066

100

0.489
  ssb Neisseria gonorrhoeae MS11

48.066

100

0.489