Detailed information    

insolico Bioinformatically predicted

Overview

Name   degU   Type   Regulator
Locus tag   K9N56_RS20550 Genome accession   NZ_CP083580
Coordinates   4007523..4008212 (-) Length   229 a.a.
NCBI ID   WP_003185730.1    Uniprot ID   Q5QSL6
Organism   Bacillus sp. PM8313     
Function   activation of comK (predicted from homology)   
Competence regulation

Genomic Context

Location: 4002523..4013212
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  K9N56_RS20515 (K9N56_20515) - 4002673..4003155 (-) 483 WP_029419581.1 flagellar protein FlgN -
  K9N56_RS20520 (K9N56_20520) flgM 4003170..4003433 (-) 264 WP_006639261.1 flagellar biosynthesis anti-sigma factor FlgM -
  K9N56_RS20525 (K9N56_20525) - 4003513..4003932 (-) 420 WP_006639262.1 TIGR03826 family flagellar region protein -
  K9N56_RS20530 (K9N56_20530) comFC 4003990..4004724 (-) 735 WP_006639263.1 ComF family protein Machinery gene
  K9N56_RS20535 (K9N56_20535) - 4004681..4004965 (-) 285 WP_006639264.1 late competence development ComFB family protein -
  K9N56_RS20540 (K9N56_20540) comFA 4005022..4006368 (-) 1347 WP_006639265.1 DEAD/DEAH box helicase Machinery gene
  K9N56_RS20545 (K9N56_20545) - 4006561..4007403 (-) 843 WP_006639266.1 DegV family protein -
  K9N56_RS20550 (K9N56_20550) degU 4007523..4008212 (-) 690 WP_003185730.1 two-component system response regulator DegU Regulator
  K9N56_RS20555 (K9N56_20555) degS 4008294..4009451 (-) 1158 WP_006639267.1 sensor histidine kinase Regulator
  K9N56_RS20560 (K9N56_20560) - 4009673..4010311 (+) 639 WP_006639268.1 YigZ family protein -
  K9N56_RS20565 (K9N56_20565) - 4010328..4011407 (+) 1080 WP_006639269.1 LCP family protein -
  K9N56_RS20570 (K9N56_20570) - 4011550..4012614 (-) 1065 WP_006639270.1 glycosyltransferase family 4 protein -

Sequence

Protein


Download         Length: 229 a.a.        Molecular weight: 25842.50 Da        Isoelectric Point: 5.9436

>NTDB_id=606325 K9N56_RS20550 WP_003185730.1 4007523..4008212(-) (degU) [Bacillus sp. PM8313]
MTKVNIVIIDDHQLFREGVKRILDFEPTFEVVAEGDDGDEAARIVEHYHPDVVIMDINMPNVNGVEATKQLVDLYPESKV
IILSIHDDENYVTHALKTGARGYLLKEMDADTLIEAVKVVAEGGSYLHPKVTHNLVNEFRRLATSGVSSHAQHEVYPEIR
RPLHILTRRECEVLQMLADGKSNRGIGESLFISEKTVKNHVSNILQKMNVNDRTQAVVVAIKNGWVEMR

Nucleotide


Download         Length: 690 bp        

>NTDB_id=606325 K9N56_RS20550 WP_003185730.1 4007523..4008212(-) (degU) [Bacillus sp. PM8313]
GTGACTAAAGTAAATATTGTAATTATTGATGATCATCAGTTATTCCGAGAAGGTGTCAAACGGATTTTGGATTTTGAGCC
TACTTTTGAGGTAGTGGCTGAAGGAGACGACGGTGATGAAGCGGCTCGCATCGTCGAGCACTATCATCCTGATGTTGTGA
TCATGGATATTAATATGCCGAATGTAAACGGAGTTGAAGCGACAAAACAGCTTGTCGATTTGTATCCTGAATCAAAGGTC
ATTATTCTATCGATCCATGATGACGAAAACTATGTGACACATGCGTTGAAAACCGGAGCGCGCGGCTATCTGCTGAAAGA
AATGGACGCAGATACATTGATTGAAGCCGTTAAGGTAGTGGCAGAAGGCGGTTCTTATCTTCACCCTAAAGTAACGCACA
ATCTTGTCAATGAATTCCGCCGTCTGGCAACAAGCGGTGTGTCATCACACGCTCAGCACGAAGTATATCCGGAAATCCGC
AGACCTTTGCACATTTTGACAAGACGGGAATGCGAAGTTTTACAGATGCTCGCGGACGGAAAAAGCAACCGCGGCATAGG
AGAATCTTTATTTATCAGTGAAAAAACGGTTAAAAACCATGTCAGCAACATCCTGCAGAAAATGAATGTCAATGACAGAA
CTCAAGCTGTAGTTGTGGCCATTAAAAATGGCTGGGTAGAAATGAGATAA

Domains

Predicted by InterproScan.

Response regulator receiver domain (Response_reg)

(6-118)

Bacterial regulatory proteins, luxR family (GerE)

(165-220)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB Q5QSL6

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  degU Bacillus subtilis subsp. subtilis str. 168

98.69

100

0.987