Detailed information    

insolico Bioinformatically predicted

Overview

Name   comFC   Type   Machinery gene
Locus tag   K9N56_RS20530 Genome accession   NZ_CP083580
Coordinates   4003990..4004724 (-) Length   244 a.a.
NCBI ID   WP_006639263.1    Uniprot ID   M5P1P9
Organism   Bacillus sp. PM8313     
Function   ssDNA transport into the cell (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 3998990..4009724
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  K9N56_RS20495 (K9N56_20495) fliW 3999142..3999573 (-) 432 WP_006639256.1 flagellar assembly protein FliW -
  K9N56_RS20500 (K9N56_20500) - 3999594..4000160 (-) 567 WP_006639257.1 DUF6470 family protein -
  K9N56_RS20505 (K9N56_20505) flgL 4000210..4001121 (-) 912 WP_006639258.1 flagellar hook-associated protein FlgL -
  K9N56_RS20510 (K9N56_20510) flgK 4001132..4002655 (-) 1524 WP_006639259.1 flagellar hook-associated protein FlgK -
  K9N56_RS20515 (K9N56_20515) - 4002673..4003155 (-) 483 WP_029419581.1 flagellar protein FlgN -
  K9N56_RS20520 (K9N56_20520) flgM 4003170..4003433 (-) 264 WP_006639261.1 flagellar biosynthesis anti-sigma factor FlgM -
  K9N56_RS20525 (K9N56_20525) - 4003513..4003932 (-) 420 WP_006639262.1 TIGR03826 family flagellar region protein -
  K9N56_RS20530 (K9N56_20530) comFC 4003990..4004724 (-) 735 WP_006639263.1 ComF family protein Machinery gene
  K9N56_RS20535 (K9N56_20535) - 4004681..4004965 (-) 285 WP_006639264.1 late competence development ComFB family protein -
  K9N56_RS20540 (K9N56_20540) comFA 4005022..4006368 (-) 1347 WP_006639265.1 DEAD/DEAH box helicase Machinery gene
  K9N56_RS20545 (K9N56_20545) - 4006561..4007403 (-) 843 WP_006639266.1 DegV family protein -
  K9N56_RS20550 (K9N56_20550) degU 4007523..4008212 (-) 690 WP_003185730.1 two-component system response regulator DegU Regulator
  K9N56_RS20555 (K9N56_20555) degS 4008294..4009451 (-) 1158 WP_006639267.1 sensor histidine kinase Regulator

Sequence

Protein


Download         Length: 244 a.a.        Molecular weight: 27999.58 Da        Isoelectric Point: 9.7015

>NTDB_id=606323 K9N56_RS20530 WP_006639263.1 4003990..4004724(-) (comFC) [Bacillus sp. PM8313]
MKIRIANNIRKEEDKLICLICEAPLLHSLSWRSFFFFKTEEKICRECKESFIKIKGSVCRKCGRPQSSEKLCPDCLKWEA
NPKTCGLLQQNRSVYVYNPFMKEVLARFKFRGDAELVYAFAPSFSRAFQTYCSHSDIALVPIPLSEERKKERGFNQAERL
ASLLNRPIMQPLIRTENEKQSKKSKAERLKQKTVFKTEKGSVKGLNVMLIDDLYTTGATLHHAAECLKADGEANTVSSYT
LIRS

Nucleotide


Download         Length: 735 bp        

>NTDB_id=606323 K9N56_RS20530 WP_006639263.1 4003990..4004724(-) (comFC) [Bacillus sp. PM8313]
ATGAAAATCCGCATTGCGAACAACATAAGAAAGGAAGAGGATAAGCTGATTTGTTTAATTTGTGAAGCGCCTCTTTTACA
TTCTCTTTCATGGCGTTCTTTTTTCTTTTTCAAGACGGAAGAAAAAATATGCAGAGAATGTAAAGAGAGCTTTATCAAAA
TAAAAGGGAGTGTGTGCCGCAAATGCGGCCGGCCTCAAAGCAGCGAAAAGCTCTGCCCGGACTGTTTAAAATGGGAAGCA
AATCCGAAAACCTGCGGCCTTCTCCAACAAAACCGCTCCGTATATGTCTATAATCCTTTCATGAAAGAAGTTCTCGCCCG
TTTTAAGTTCAGGGGCGACGCAGAACTCGTCTACGCATTTGCTCCTTCATTTAGCCGCGCCTTTCAAACATACTGCTCCC
ATTCAGATATCGCACTGGTACCGATACCCCTCAGTGAAGAACGCAAAAAGGAAAGAGGCTTTAACCAGGCGGAAAGGCTT
GCTTCCTTATTGAACAGGCCTATCATGCAGCCATTGATCAGAACGGAAAATGAGAAACAGTCGAAAAAAAGCAAGGCGGA
GCGTCTTAAACAGAAAACGGTTTTCAAGACGGAGAAGGGTTCTGTAAAAGGTTTGAACGTCATGCTGATTGATGATTTGT
ATACGACTGGGGCCACTCTTCATCATGCGGCTGAATGTCTGAAAGCGGACGGGGAAGCAAATACAGTATCATCCTACACT
TTAATTCGAAGCTAA

Domains

Predicted by InterproScan.

Double zinc ribbon domain (DZR_2)

(18-76)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB M5P1P9

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comFC Bacillus subtilis subsp. subtilis str. 168

53.913

94.262

0.508