Detailed information    

insolico Bioinformatically predicted

Overview

Name   ssb   Type   Machinery gene
Locus tag   K9838_RS14775 Genome accession   NZ_CP083575
Coordinates   3317135..3317662 (-) Length   175 a.a.
NCBI ID   WP_017157214.1    Uniprot ID   A0A8I1XL23
Organism   Xanthomonas phaseoli pv. manihotis strain CHN01     
Function   ssDNA binding (predicted from homology)   
DNA processing

Genomic Context

Location: 3312135..3322662
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  K9838_RS14760 (K9838_14770) paoA 3313008..3313658 (-) 651 WP_017157210.1 aldehyde dehydrogenase iron-sulfur subunit PaoA -
  K9838_RS14765 (K9838_14775) - 3314072..3315079 (-) 1008 WP_017157212.1 NAD(P)-dependent alcohol dehydrogenase -
  K9838_RS14770 (K9838_14780) - 3315303..3316850 (+) 1548 WP_017157213.1 sensor domain-containing diguanylate cyclase -
  K9838_RS14775 (K9838_14785) ssb 3317135..3317662 (-) 528 WP_017157214.1 single-stranded DNA-binding protein Machinery gene
  K9838_RS14780 (K9838_14790) - 3317938..3318936 (+) 999 WP_017157215.1 polyprenyl synthetase family protein -
  K9838_RS14785 (K9838_14795) - 3319139..3319939 (-) 801 WP_017157216.1 dienelactone hydrolase family protein -
  K9838_RS14790 (K9838_14800) murD 3320243..3321649 (-) 1407 WP_017157217.1 UDP-N-acetylmuramoyl-L-alanine--D-glutamate ligase -

Sequence

Protein


Download         Length: 175 a.a.        Molecular weight: 18810.68 Da        Isoelectric Point: 5.3095

>NTDB_id=606254 K9838_RS14775 WP_017157214.1 3317135..3317662(-) (ssb) [Xanthomonas phaseoli pv. manihotis strain CHN01]
MARGINKVILVGNLGNDPDTKYTQAGMAITRVSLATTSMRKDRDGNNQERTEWHRVVFFGKLGEIAGEYLRKGSQVYVEG
ELRYDKYTGQDGVEKYSTDIVANEMQMLGGRGEGGGGGMGGDRPQRSAPRQQGGGGGQGGGYGGGGQDYAPRRQQPAQQQ
SAPPMDDFADDDIPF

Nucleotide


Download         Length: 528 bp        

>NTDB_id=606254 K9838_RS14775 WP_017157214.1 3317135..3317662(-) (ssb) [Xanthomonas phaseoli pv. manihotis strain CHN01]
ATGGCCCGCGGCATCAACAAAGTCATCCTCGTCGGCAACCTCGGCAACGATCCCGATACCAAATACACCCAGGCCGGCAT
GGCAATCACGCGCGTGAGCCTGGCTACCACCAGCATGCGCAAGGACCGCGACGGCAATAACCAGGAACGTACCGAGTGGC
ACCGCGTGGTGTTTTTCGGAAAGCTGGGCGAAATTGCCGGCGAATACCTGCGTAAGGGGTCGCAGGTCTATGTCGAAGGC
GAACTGCGCTACGACAAGTACACCGGCCAGGACGGCGTGGAGAAGTACAGCACCGACATCGTCGCCAACGAGATGCAGAT
GCTCGGCGGCCGTGGTGAAGGCGGCGGGGGCGGGATGGGCGGCGATCGCCCGCAGCGCTCGGCACCGCGTCAGCAGGGCG
GCGGCGGTGGGCAGGGCGGTGGATACGGTGGCGGTGGGCAGGACTATGCGCCGCGCCGCCAGCAGCCGGCCCAGCAGCAG
TCGGCACCGCCGATGGACGATTTCGCCGACGACGATATCCCGTTCTGA

Domains

Predicted by InterproScan.

Single-strand binding protein family (SSB)

(5-108)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  ssb Vibrio cholerae strain A1552

45.078

100

0.497
  ssb Glaesserella parasuis strain SC1401

45.902

100

0.48
  ssb Neisseria meningitidis MC58

42.935

100

0.451
  ssb Neisseria gonorrhoeae MS11

42.935

100

0.451