Detailed information    

insolico Bioinformatically predicted

Overview

Name   ssb   Type   Machinery gene
Locus tag   ABEDC_RS14700 Genome accession   NZ_CP083571
Coordinates   3044113..3044700 (-) Length   195 a.a.
NCBI ID   WP_374952318.1    Uniprot ID   -
Organism   Acinetobacter lwoffii strain ED9-5a     
Function   ssDNA binding (predicted from homology)   
DNA processing

Related MGE

Note: This gene co-localizes with putative mobile genetic elements (MGEs) in the genome predicted by VRprofile2, as detailed below.

Gene-MGE association summary

MGE type MGE coordinates Gene coordinates Relative position Distance (bp)
Genomic island 3032798..3043957 3044113..3044700 flank 156


Gene organization within MGE regions


Location: 3032798..3044700
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  ABEDC_RS14660 (ABEDC_3051) - 3032798..3033889 (-) 1092 WP_129717602.1 hypothetical protein -
  ABEDC_RS14665 (ABEDC_3052) - 3034303..3036126 (+) 1824 WP_374952316.1 AAA family ATPase -
  ABEDC_RS14670 (ABEDC_3053) - 3036119..3037039 (+) 921 WP_129717606.1 HAMP domain-containing sensor histidine kinase -
  ABEDC_RS14675 (ABEDC_3054) - 3037039..3038493 (+) 1455 WP_374952317.1 response regulator -
  ABEDC_RS14680 (ABEDC_3055) - 3038645..3039064 (-) 420 WP_129717981.1 hypothetical protein -
  ABEDC_RS14685 (ABEDC_3056) - 3039066..3041189 (-) 2124 WP_336024404.1 integrase -
  ABEDC_RS14690 (ABEDC_3057) - 3041182..3042738 (-) 1557 WP_129717610.1 site-specific integrase -
  ABEDC_RS14695 (ABEDC_3058) - 3042731..3043957 (-) 1227 WP_129717612.1 site-specific integrase -
  ABEDC_RS14700 (ABEDC_3059) ssb 3044113..3044700 (-) 588 WP_374952318.1 single-stranded DNA-binding protein Machinery gene

Sequence

Protein


Download         Length: 195 a.a.        Molecular weight: 21389.09 Da        Isoelectric Point: 6.4820

>NTDB_id=606248 ABEDC_RS14700 WP_374952318.1 3044113..3044700(-) (ssb) [Acinetobacter lwoffii strain ED9-5a]
MRGVNKVILVGTLGKDPETKTFANGGSLTQFSIATSDSWTDKSTGERKEQTEWHRIVLHNRLGEIAQQYLRKGSKVYIEG
SLRTRQWTDQNGQERYTTEIRGEQMQMLDSSRPQNDQGESSFNQPRFNNNNQANNNQGGYSNNPQSGYGSAPQQGGFNNN
QGGGYGNNNPSGFAPKSAPAPTAAPAADLDDDLPF

Nucleotide


Download         Length: 588 bp        

>NTDB_id=606248 ABEDC_RS14700 WP_374952318.1 3044113..3044700(-) (ssb) [Acinetobacter lwoffii strain ED9-5a]
ATGCGTGGTGTAAATAAAGTTATTTTAGTGGGTACTTTGGGTAAAGATCCGGAAACCAAAACTTTTGCAAATGGTGGCTC
TCTCACTCAATTCTCGATCGCAACCAGCGATTCGTGGACAGATAAAAGTACCGGTGAACGTAAAGAACAAACGGAATGGC
ACCGTATCGTGTTGCATAACCGTTTAGGTGAAATTGCGCAGCAATATCTTCGTAAAGGCTCAAAAGTATATATTGAAGGT
TCATTACGTACCCGTCAGTGGACTGACCAGAATGGTCAGGAACGCTATACGACGGAAATCCGTGGTGAGCAAATGCAGAT
GCTAGACTCTAGCCGTCCTCAAAATGATCAGGGTGAGAGCAGCTTTAACCAGCCACGCTTTAATAACAATAATCAGGCGA
ACAACAACCAGGGCGGTTATAGCAATAACCCGCAATCGGGTTATGGTTCAGCACCACAGCAAGGCGGTTTTAACAACAAT
CAGGGCGGCGGTTATGGCAATAATAACCCGAGTGGTTTTGCGCCGAAATCTGCCCCTGCTCCAACAGCAGCGCCTGCAGC
AGATCTAGATGATGACCTTCCGTTTTGA

Domains

Predicted by InterproScan.

Single-strand binding protein family (SSB)

(4-108)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  ssb Glaesserella parasuis strain SC1401

52.261

100

0.533
  ssb Vibrio cholerae strain A1552

41.709

100

0.426
  ssb Neisseria meningitidis MC58

36.979

98.462

0.364
  ssb Neisseria gonorrhoeae MS11

36.979

98.462

0.364