Detailed information    

insolico Bioinformatically predicted

Overview

Name   ssb   Type   Machinery gene
Locus tag   K3724_RS10850 Genome accession   NZ_CP083546
Coordinates   2171534..2172058 (+) Length   174 a.a.
NCBI ID   WP_259984671.1    Uniprot ID   A0A9Q9HK76
Organism   Leisingera sp. M658     
Function   ssDNA binding (predicted from homology)   
DNA processing

Genomic Context

Location: 2166534..2177058
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  K3724_RS10830 (K3724_10810) - 2168690..2170153 (-) 1464 WP_259984664.1 tetratricopeptide repeat-containing sulfotransferase family protein -
  K3724_RS10835 (K3724_10815) - 2170224..2170598 (-) 375 WP_259984665.1 hypothetical protein -
  K3724_RS10840 (K3724_10820) - 2170716..2171300 (-) 585 WP_259984667.1 lytic transglycosylase domain-containing protein -
  K3724_RS10845 (K3724_10825) - 2171344..2171550 (+) 207 WP_259984669.1 hypothetical protein -
  K3724_RS10850 (K3724_10830) ssb 2171534..2172058 (+) 525 WP_259984671.1 single-stranded DNA-binding protein Machinery gene
  K3724_RS10855 (K3724_10835) - 2172359..2172475 (+) 117 Protein_2139 IS3 family transposase -
  K3724_RS23990 (K3724_10840) - 2172635..2172877 (+) 243 WP_409201375.1 transposase -
  K3724_RS10860 (K3724_10845) - 2173292..2174695 (-) 1404 WP_259984672.1 TRAP transporter large permease -
  K3724_RS10865 (K3724_10850) - 2174701..2175351 (-) 651 WP_129370679.1 TRAP transporter small permease subunit -
  K3724_RS10870 (K3724_10855) - 2175433..2176449 (-) 1017 WP_259984675.1 C4-dicarboxylate TRAP transporter substrate-binding protein -

Sequence

Protein


Download         Length: 174 a.a.        Molecular weight: 18316.85 Da        Isoelectric Point: 5.2733

>NTDB_id=606190 K3724_RS10850 WP_259984671.1 2171534..2172058(+) (ssb) [Leisingera sp. M658]
MAGSLNKVMLIGNLGRDPEVRSFQNGGKVCNLRIATSENWKDRNTGERRERTEWHSVAIFSEGLVRVAEQYLRKGSKVYI
EGQLQTRKWQDQSGQDRYSTEIVLQGFGSTLTMLDGRGEGGGGQDGGGGGGYGGGSQGGYGGGYDSGQQGGGSGGGSNFG
GGASHNIDDDEIPF

Nucleotide


Download         Length: 525 bp        

>NTDB_id=606190 K3724_RS10850 WP_259984671.1 2171534..2172058(+) (ssb) [Leisingera sp. M658]
ATGGCCGGCTCTCTTAATAAAGTCATGCTCATCGGCAATCTGGGCCGCGACCCGGAGGTGCGCAGCTTCCAGAACGGCGG
CAAGGTGTGCAACCTGCGCATTGCCACCTCGGAAAACTGGAAGGACCGCAACACCGGTGAACGCCGCGAGCGGACCGAGT
GGCACTCTGTGGCCATCTTCAGCGAAGGTCTTGTGCGCGTTGCAGAGCAGTATCTGCGCAAAGGCTCCAAGGTCTATATC
GAAGGCCAGCTGCAGACCCGAAAATGGCAGGACCAAAGCGGCCAGGACCGGTATTCGACCGAAATCGTCCTGCAAGGCTT
CGGCTCCACCCTGACCATGCTTGACGGCCGCGGTGAAGGCGGCGGCGGCCAAGACGGTGGTGGCGGCGGCGGTTATGGCG
GCGGCAGCCAGGGCGGCTACGGCGGCGGTTATGACAGCGGCCAGCAAGGCGGTGGCAGCGGCGGCGGCAGCAATTTCGGC
GGCGGCGCGTCCCATAACATCGATGACGACGAAATCCCGTTCTAA

Domains

Predicted by InterproScan.

Single-strand binding protein family (SSB)

(5-105)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  ssb Glaesserella parasuis strain SC1401

48.404

100

0.523
  ssb Vibrio cholerae strain A1552

50.568

100

0.511
  ssb Neisseria gonorrhoeae MS11

41.899

100

0.431
  ssb Neisseria meningitidis MC58

41.341

100

0.425