Detailed information    

insolico Bioinformatically predicted

Overview

Name   ssb   Type   Machinery gene
Locus tag   NMD61_RS22055 Genome accession   NZ_CP100876
Coordinates   4448675..4449211 (-) Length   178 a.a.
NCBI ID   WP_000168305.1    Uniprot ID   A0A370V115
Organism   Escherichia coli strain ET979     
Function   ssDNA binding (predicted from homology)   
DNA processing

Genomic Context

Location: 4443675..4454211
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  NMD61_RS22035 (NMD61_21895) soxR 4445403..4445867 (-) 465 WP_000412428.1 redox-sensitive transcriptional activator SoxR -
  NMD61_RS22040 (NMD61_21900) soxS 4445953..4446276 (+) 324 WP_000019358.1 superoxide response transcriptional regulator SoxS -
  NMD61_RS22045 (NMD61_21905) pdeC 4446279..4447865 (-) 1587 WP_000019549.1 c-di-GMP phosphodiesterase PdeC -
  NMD61_RS22050 (NMD61_21910) yjcB 4448295..4448576 (+) 282 WP_001295689.1 YjcB family protein -
  NMD61_RS22055 (NMD61_21915) ssb 4448675..4449211 (-) 537 WP_000168305.1 single-stranded DNA-binding protein SSB1 Machinery gene
  NMD61_RS22060 (NMD61_21920) uvrA 4449465..4452287 (+) 2823 WP_000357740.1 excinuclease ABC subunit UvrA Machinery gene
  NMD61_RS22065 (NMD61_21925) yjbR 4452322..4452678 (-) 357 WP_000155657.1 MmcQ/YjbR family DNA-binding protein -
  NMD61_RS22070 (NMD61_21930) yjbQ 4452682..4453098 (-) 417 WP_000270375.1 secondary thiamine-phosphate synthase enzyme YjbQ -
  NMD61_RS22075 (NMD61_21935) aphA 4453209..4453922 (-) 714 WP_001395166.1 acid phosphatase AphA -

Sequence

Protein


Download         Length: 178 a.a.        Molecular weight: 18975.00 Da        Isoelectric Point: 5.2358

>NTDB_id=606168 NMD61_RS22055 WP_000168305.1 4448675..4449211(-) (ssb) [Escherichia coli strain ET979]
MASRGVNKVILVGNLGQDPEVRYMPNGGAVANITLATSESWRDKATGEMKEQTEWHRVVLFGKLAEVASEYLRKGSQVYI
EGQLRTRKWTDQSGQDRYTTEVVVNVGGTMQMLGGRQGGGAPAGGNIGGGQPQGGWGQPQQPQGGNQFSGGAQSRPQQSA
PAAPSNEPPMDFDDDIPF

Nucleotide


Download         Length: 537 bp        

>NTDB_id=606168 NMD61_RS22055 WP_000168305.1 4448675..4449211(-) (ssb) [Escherichia coli strain ET979]
ATGGCCAGCAGAGGCGTAAACAAGGTTATTCTCGTTGGTAATCTGGGTCAGGACCCGGAAGTACGCTACATGCCAAATGG
TGGCGCAGTTGCCAACATTACGCTGGCTACTTCCGAATCCTGGCGTGATAAAGCGACCGGCGAGATGAAAGAACAGACTG
AATGGCACCGCGTTGTGCTGTTCGGCAAACTGGCAGAAGTGGCGAGCGAATATCTGCGTAAAGGTTCTCAGGTTTATATC
GAAGGTCAGCTGCGTACCCGTAAATGGACCGATCAATCCGGTCAGGATCGCTACACCACAGAAGTCGTGGTGAACGTTGG
CGGCACCATGCAGATGCTGGGTGGTCGTCAGGGTGGTGGCGCTCCGGCAGGTGGCAATATCGGTGGTGGTCAGCCGCAGG
GCGGTTGGGGTCAGCCTCAGCAGCCGCAGGGTGGCAATCAGTTCAGCGGCGGCGCGCAGTCTCGCCCGCAGCAGTCCGCT
CCGGCAGCGCCGTCTAACGAGCCGCCGATGGACTTTGATGATGACATTCCGTTCTGA

Domains

Predicted by InterProScan.

Single-strand binding protein family (SSB)

(6-112)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB A0A370V115

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  ssb Vibrio cholerae strain A1552

74.444

100

0.753
  ssb Glaesserella parasuis strain SC1401

57.923

100

0.596
  ssb Neisseria meningitidis MC58

48.066

100

0.489
  ssb Neisseria gonorrhoeae MS11

48.066

100

0.489