NTDB

Overview

Name	ssb	Type	Machinery gene
Locus tag	LAG74_RS02360	Genome accession	NZ_CP083461
Coordinates	493278..493865 (-)	Length	195 a.a.
NCBI ID	WP_047440186.1	Uniprot ID	A0A494U2W6
Organism	Aeromonas veronii strain SW3814
Function	ssDNA binding (predicted from homology) DNA processing

Related MGE

Note: This gene co-localizes with putative mobile genetic elements (MGEs) in the genome predicted by VRprofile2, as detailed below.

Gene-MGE association summary

MGE type	MGE coordinates	Gene coordinates	Relative position	Distance (bp)
Genomic island	480732..493112	493278..493865	flank	166

Gene organization within MGE regions

Location: 480732..493865

Locus tag	Gene name	Coordinates (strand)	Size (bp)	Protein ID	Product	Description
LAG74_RS02300 (LAG74_02305)	-	480846..481316 (+)	471	WP_017780886.1	hypothetical protein	-
LAG74_RS02305 (LAG74_02310)	-	481526..481717 (+)	192	WP_017780887.1	hypothetical protein	-
LAG74_RS02310 (LAG74_02315)	tetR	482049..482684 (-)	636	WP_017780888.1	tetracycline resistance transcriptional repressor TetR	-
LAG74_RS02315 (LAG74_02320)	tet(E)	482765..483982 (+)	1218	WP_017780889.1	tetracycline efflux MFS transporter Tet(E)	-
LAG74_RS02320 (LAG74_02325)	-	484070..484738 (-)	669	WP_017780890.1	hypothetical protein	-
LAG74_RS02325 (LAG74_02330)	-	484897..485058 (-)	162	Protein_446	IS5/IS1182 family transposase	-
LAG74_RS02330 (LAG74_02335)	-	485276..487438 (-)	2163	WP_017780891.1	AAA family ATPase	-
LAG74_RS02335 (LAG74_02340)	-	487435..487875 (-)	441	WP_017780892.1	VPA1267 family protein	-
LAG74_RS02340 (LAG74_02345)	-	487872..488351 (-)	480	WP_021140823.1	hypothetical protein	-
LAG74_RS02345 (LAG74_02350)	-	488339..490216 (-)	1878	WP_034524358.1	integrase	-
LAG74_RS02350 (LAG74_02355)	-	490226..491794 (-)	1569	WP_174218922.1	site-specific integrase	-
LAG74_RS02355 (LAG74_02360)	-	491787..493112 (-)	1326	WP_043147737.1	site-specific integrase	-
LAG74_RS02360 (LAG74_02365)	ssb	493278..493865 (-)	588	WP_047440186.1	single-stranded DNA-binding protein	Machinery gene

Sequence

Protein

Download Length: 195 a.a. Molecular weight: 21573.08 Da Isoelectric Point: 5.9301

                                >NTDB_id=606008 LAG74_RS02360 WP_047440186.1 493278..493865(-) (ssb) [Aeromonas veronii strain SW3814]

MASRGINKVILIGNLGQDPEVRYMPSGGAVTNITLATSETWRDKQTGEQKERTEWHRVVFMGKLAEVAGEYLKKGSQVYV

EGKLQTRKWQDQSGQERYTTEVLVDSFTGVMQMLGGRPQGGQGMGQNMGGQSQGNWGQPQQSMPAQQPMNQQRSAPAPQQ

NMQPQGGYGRPAQQPQSAPPVYNEPPMDFDDDIPF

Nucleotide

Download Length: 588 bp

                                >NTDB_id=606008 LAG74_RS02360 WP_047440186.1 493278..493865(-) (ssb) [Aeromonas veronii strain SW3814]

ATGGCCAGTCGAGGCATCAATAAAGTCATTCTGATCGGTAACCTCGGGCAAGACCCGGAAGTACGCTACATGCCGAGTGG

CGGTGCTGTGACCAACATTACTCTGGCTACCTCCGAAACCTGGCGCGACAAGCAGACCGGTGAGCAGAAAGAGCGTACCG

AATGGCACCGCGTCGTCTTCATGGGCAAGCTGGCCGAAGTGGCTGGCGAGTACCTGAAGAAGGGCTCCCAGGTCTATGTG

GAAGGCAAACTGCAGACCCGCAAATGGCAGGATCAGAGCGGCCAGGAGCGCTACACCACTGAAGTGCTGGTCGACAGCTT

CACTGGCGTGATGCAGATGCTGGGTGGTCGTCCGCAAGGCGGCCAGGGTATGGGCCAGAACATGGGTGGCCAATCCCAGG

GTAACTGGGGTCAGCCGCAGCAGAGCATGCCTGCCCAGCAGCCGATGAATCAGCAGCGCTCGGCACCGGCTCCGCAGCAG

AACATGCAGCCGCAAGGCGGTTATGGCCGTCCTGCCCAGCAGCCGCAATCTGCGCCGCCGGTATATAACGAGCCGCCGAT

GGATTTCGACGACGATATCCCGTTCTAG

Domains

Predicted by InterproScan.

Single-strand binding protein family (SSB)

(6-107)

Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.

3D structure

Source	ID	Structure
AlphaFold DB	A0A494U2W6

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.

Visualization of predicted probability:

Similar proteins

Only experimentally validated proteins are listed.

Protein	Organism	Identities (%)	Coverage (%)	H_a-value
ssb	Vibrio cholerae strain A1552	69.347	100	0.708
ssb	Glaesserella parasuis strain SC1401	53.886	98.974	0.533
ssb	Neisseria meningitidis MC58	46.597	97.949	0.456
ssb	Neisseria gonorrhoeae MS11	46.842	97.436	0.456

Detailed information NTG0606008