Detailed information    

insolico Bioinformatically predicted

Overview

Name   ssb   Type   Machinery gene
Locus tag   LAD35_RS19370 Genome accession   NZ_CP083451
Coordinates   4223460..4224041 (-) Length   193 a.a.
NCBI ID   WP_224150562.1    Uniprot ID   -
Organism   Comamonas odontotermitis strain WLL     
Function   ssDNA binding (predicted from homology)   
DNA processing

Genomic Context

Location: 4218460..4229041
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  LAD35_RS19350 (LAD35_19350) - 4218971..4220320 (-) 1350 WP_224150558.1 tol-pal system YbgF family protein -
  LAD35_RS19355 (LAD35_19355) - 4220449..4221963 (-) 1515 WP_224150559.1 rhomboid family intramembrane serine protease -
  LAD35_RS19360 (LAD35_19360) - 4222148..4222633 (-) 486 WP_224150560.1 YbaK/prolyl-tRNA synthetase associated domain-containing protein -
  LAD35_RS19365 (LAD35_19365) - 4222637..4223371 (-) 735 WP_224150561.1 ABC transporter substrate-binding protein -
  LAD35_RS19370 (LAD35_19370) ssb 4223460..4224041 (-) 582 WP_224150562.1 single-stranded DNA-binding protein Machinery gene
  LAD35_RS19375 (LAD35_19375) - 4224207..4225430 (-) 1224 WP_224152824.1 MFS transporter -
  LAD35_RS19380 (LAD35_19380) uvrA 4225797..4228937 (+) 3141 WP_224150563.1 excinuclease ABC subunit UvrA -

Sequence

Protein


Download         Length: 193 a.a.        Molecular weight: 20784.83 Da        Isoelectric Point: 5.9505

>NTDB_id=605964 LAD35_RS19370 WP_224150562.1 4223460..4224041(-) (ssb) [Comamonas odontotermitis strain WLL]
MASVNKVIIVGNLGRDPEIRTFPSGDQVANVTIATTDRWRDKNTGENKEATEWHRVVFNGRLAEIVGQYLRKGSQVYVEG
SLRTRKWTDQATGQERYATEIRADTMQMLGSRQGQGGQGQGDDYGYGDSGYGDQGGGGQGGGQGGYQQRRAPAPAMAPRQ
QQAPAPRPAPAPMPAPAPRAASGFDDMDDDIPF

Nucleotide


Download         Length: 582 bp        

>NTDB_id=605964 LAD35_RS19370 WP_224150562.1 4223460..4224041(-) (ssb) [Comamonas odontotermitis strain WLL]
ATGGCATCCGTCAACAAAGTCATCATCGTCGGCAATCTCGGCCGCGATCCCGAAATCCGCACCTTCCCGTCGGGCGACCA
GGTCGCCAACGTCACCATTGCCACCACCGACCGCTGGCGTGACAAGAACACCGGCGAGAACAAGGAGGCCACCGAATGGC
ACCGTGTGGTTTTCAATGGCCGCCTGGCAGAAATCGTGGGGCAGTACCTGCGCAAGGGCAGCCAGGTGTATGTGGAAGGC
AGCCTGCGCACCCGCAAGTGGACCGACCAGGCCACCGGCCAGGAGCGTTACGCCACCGAAATCCGCGCTGACACCATGCA
GATGCTGGGCAGCCGCCAGGGCCAGGGCGGTCAGGGCCAGGGCGACGACTACGGCTATGGCGACAGCGGCTACGGCGACC
AAGGCGGTGGCGGCCAGGGTGGTGGCCAAGGCGGCTACCAGCAGCGCCGCGCGCCAGCGCCTGCCATGGCTCCTCGCCAA
CAGCAGGCACCTGCACCGCGTCCGGCGCCCGCACCCATGCCCGCACCGGCTCCGCGCGCAGCGTCGGGCTTTGACGACAT
GGACGACGATATTCCGTTCTGA

Domains

Predicted by InterproScan.

Single-strand binding protein family (SSB)

(4-109)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  ssb Vibrio cholerae strain A1552

50.754

100

0.523
  ssb Glaesserella parasuis strain SC1401

52.062

100

0.523
  ssb Neisseria gonorrhoeae MS11

45.312

99.482

0.451
  ssb Neisseria meningitidis MC58

44.271

99.482

0.44