Detailed information    

insolico Bioinformatically predicted

Overview

Name   ssb   Type   Machinery gene
Locus tag   LAC65_RS01215 Genome accession   NZ_CP083448
Coordinates   271707..272267 (+) Length   186 a.a.
NCBI ID   WP_039382009.1    Uniprot ID   -
Organism   Pantoea eucrina strain XL123     
Function   ssDNA binding (predicted from homology)   
DNA processing

Genomic Context

Location: 266707..277267
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  LAC65_RS01200 (LAC65_01200) - 266974..267324 (+) 351 WP_039381999.1 MmcQ/YjbR family DNA-binding protein -
  LAC65_RS01205 (LAC65_01205) - 267329..268393 (-) 1065 WP_039382002.1 NAD(P)-dependent alcohol dehydrogenase -
  LAC65_RS01210 (LAC65_01210) uvrA 268652..271480 (-) 2829 WP_039382007.1 excinuclease ABC subunit UvrA -
  LAC65_RS01215 (LAC65_01215) ssb 271707..272267 (+) 561 WP_039382009.1 single-stranded DNA-binding protein Machinery gene
  LAC65_RS01220 (LAC65_01220) - 272583..273698 (+) 1116 WP_039382012.1 type IV toxin-antitoxin system AbiEi family antitoxin -
  LAC65_RS01225 (LAC65_01225) - 273881..274588 (+) 708 WP_224144803.1 hypothetical protein -
  LAC65_RS01230 (LAC65_01230) - 275678..276073 (-) 396 WP_039382017.1 transposase -

Sequence

Protein


Download         Length: 186 a.a.        Molecular weight: 20050.96 Da        Isoelectric Point: 5.2456

>NTDB_id=605930 LAC65_RS01215 WP_039382009.1 271707..272267(+) (ssb) [Pantoea eucrina strain XL123]
MASRGVNKVILVGNLGQDPEVRFMPNGGAVANFTLATSESWRDKQTGENKENTEWHRVVLFGKLAEVAGEYLRKGSQVYI
EGQLRTRKWQDQSGQEKYTTEVVVNVGGTMQMLGGRQQGGANAGGAPMGGQSGGGNNNGWGQPQQPQQQQSQGGNQFSGG
AQQRPQQQSAPANNEPPMDFDDDIPF

Nucleotide


Download         Length: 561 bp        

>NTDB_id=605930 LAC65_RS01215 WP_039382009.1 271707..272267(+) (ssb) [Pantoea eucrina strain XL123]
ATGGCCAGTCGTGGCGTAAACAAAGTGATTCTTGTCGGGAATCTGGGTCAGGATCCGGAAGTGCGTTTCATGCCAAACGG
TGGCGCTGTAGCCAACTTCACGCTGGCCACGTCTGAAAGCTGGCGTGACAAGCAGACCGGTGAAAACAAAGAGAACACCG
AATGGCACCGCGTTGTGCTGTTTGGCAAACTGGCTGAAGTTGCCGGCGAATATCTGCGTAAAGGCTCACAGGTCTATATT
GAAGGTCAGCTGCGTACACGCAAGTGGCAGGATCAGAGCGGTCAGGAAAAATATACCACCGAGGTTGTTGTCAACGTAGG
CGGCACCATGCAGATGCTGGGCGGACGTCAGCAGGGCGGTGCGAATGCAGGTGGCGCACCGATGGGCGGCCAGAGCGGCG
GCGGAAATAACAACGGCTGGGGTCAGCCACAGCAGCCGCAGCAGCAGCAGTCTCAGGGCGGCAATCAGTTCAGCGGCGGC
GCGCAGCAGCGTCCACAGCAGCAGAGCGCACCGGCGAACAACGAACCGCCAATGGATTTCGACGACGATATCCCGTTCTG
A

Domains

Predicted by InterproScan.

Single-strand binding protein family (SSB)

(6-112)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  ssb Vibrio cholerae strain A1552

69.681

100

0.704
  ssb Glaesserella parasuis strain SC1401

55.208

100

0.57
  ssb Neisseria gonorrhoeae MS11

45.455

100

0.457
  ssb Neisseria meningitidis MC58

45.455

100

0.457