Detailed information    

insolico Bioinformatically predicted

Overview

Name   ssb   Type   Machinery gene
Locus tag   K9V45_RS19565 Genome accession   NZ_CP083442
Coordinates   4265102..4265614 (+) Length   170 a.a.
NCBI ID   WP_009045846.1    Uniprot ID   A0AB33WX86
Organism   Pseudomonas chlororaphis strain L5734     
Function   ssDNA binding (predicted from homology)   
DNA processing

Genomic Context

Location: 4260102..4270614
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  K9V45_RS19550 (K9V45_19550) bfr 4260127..4260591 (+) 465 WP_007924173.1 bacterioferritin -
  K9V45_RS19555 (K9V45_19555) uvrA 4260683..4263517 (-) 2835 WP_226303361.1 excinuclease ABC subunit UvrA -
  K9V45_RS19560 (K9V45_19560) - 4263698..4265092 (+) 1395 WP_106698751.1 MFS transporter -
  K9V45_RS19565 (K9V45_19565) ssb 4265102..4265614 (+) 513 WP_009045846.1 single-stranded DNA-binding protein Machinery gene
  K9V45_RS19570 (K9V45_19570) - 4265687..4267078 (-) 1392 WP_226303362.1 amidase -
  K9V45_RS19575 (K9V45_19575) - 4267075..4268466 (-) 1392 WP_226303363.1 MFS transporter -
  K9V45_RS19580 (K9V45_19580) purD 4268516..4269766 (-) 1251 WP_226303364.1 phosphoribosylamine--glycine ligase -

Sequence

Protein


Download         Length: 170 a.a.        Molecular weight: 18934.07 Da        Isoelectric Point: 5.9455

>NTDB_id=605865 K9V45_RS19565 WP_009045846.1 4265102..4265614(+) (ssb) [Pseudomonas chlororaphis strain L5734]
MARGVNKVILVGTCGQDPEVRYLPNGNAVTNLSLATSEQWTDKQTGQKVEKTEWHRVSMFGKVAEIAGEYLRKGSQVYIE
GKLQTREWEKDGIKRYTTEIIVDMQGTMQLLGGRPQGDQGQGMGNSAPRPQQSRPQPSQAPQRESRPAPQQSSPQPAQNF
DDSFDDDIPF

Nucleotide


Download         Length: 513 bp        

>NTDB_id=605865 K9V45_RS19565 WP_009045846.1 4265102..4265614(+) (ssb) [Pseudomonas chlororaphis strain L5734]
ATGGCCCGTGGGGTTAACAAAGTCATATTGGTCGGCACTTGCGGCCAGGATCCTGAAGTTCGCTACCTGCCTAACGGTAA
CGCCGTGACCAACCTGAGTCTGGCCACCAGCGAACAGTGGACCGACAAGCAGACCGGTCAGAAGGTCGAGAAGACCGAAT
GGCACCGTGTGTCGATGTTCGGCAAGGTCGCGGAAATCGCCGGCGAGTACCTGCGCAAAGGTTCGCAGGTCTACATCGAA
GGCAAGCTGCAGACCCGCGAGTGGGAAAAAGACGGCATCAAGCGTTACACCACTGAAATCATCGTCGACATGCAGGGCAC
CATGCAGCTGCTGGGCGGCCGTCCACAGGGCGACCAGGGCCAGGGCATGGGCAACTCCGCGCCACGTCCACAGCAGTCGC
GTCCACAGCCTTCGCAGGCGCCACAACGCGAATCGCGTCCAGCGCCTCAGCAGTCCTCGCCGCAGCCGGCGCAGAACTTC
GACGACAGCTTCGATGACGATATTCCGTTCTAA

Domains

Predicted by InterproScan.

Single-strand binding protein family (SSB)

(5-107)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  ssb Vibrio cholerae strain A1552

58.427

100

0.612
  ssb Glaesserella parasuis strain SC1401

46.392

100

0.529
  ssb Neisseria meningitidis MC58

48.864

100

0.506
  ssb Neisseria gonorrhoeae MS11

48.295

100

0.5