Detailed information    

insolico Bioinformatically predicted

Overview

Name   sinR   Type   Regulator
Locus tag   K9864_RS13185 Genome accession   NZ_CP083436
Coordinates   2659357..2659692 (+) Length   111 a.a.
NCBI ID   WP_003153104.1    Uniprot ID   -
Organism   Bacillus velezensis strain HC-8     
Function   repression of rok; repression of degU; repression of spo0A (predicted from homology)   
Competence regulation

Genomic Context

Location: 2654357..2664692
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  K9864_RS13165 (K9864_13070) gcvT 2654963..2656063 (-) 1101 WP_014418366.1 glycine cleavage system aminomethyltransferase GcvT -
  K9864_RS13170 (K9864_13075) - 2656487..2658157 (+) 1671 WP_021494309.1 DEAD/DEAH box helicase -
  K9864_RS13175 (K9864_13080) - 2658179..2658973 (+) 795 WP_014418368.1 YqhG family protein -
  K9864_RS13180 (K9864_13085) sinI 2659150..2659323 (+) 174 WP_014418369.1 anti-repressor SinI Regulator
  K9864_RS13185 (K9864_13090) sinR 2659357..2659692 (+) 336 WP_003153104.1 transcriptional regulator SinR Regulator
  K9864_RS13190 (K9864_13095) tasA 2659740..2660525 (-) 786 WP_007408329.1 biofilm matrix protein TasA -
  K9864_RS13195 (K9864_13100) sipW 2660590..2661174 (-) 585 WP_014418370.1 signal peptidase I SipW -
  K9864_RS13200 (K9864_13105) tapA 2661146..2661817 (-) 672 WP_014418371.1 amyloid fiber anchoring/assembly protein TapA -
  K9864_RS13205 (K9864_13110) - 2662076..2662405 (+) 330 WP_014418372.1 DUF3889 domain-containing protein -
  K9864_RS13210 (K9864_13115) - 2662446..2662625 (-) 180 WP_003153093.1 YqzE family protein -
  K9864_RS13215 (K9864_13120) comGG 2662682..2663059 (-) 378 WP_014418373.1 competence type IV pilus minor pilin ComGG Machinery gene
  K9864_RS13220 (K9864_13125) comGF 2663060..2663560 (-) 501 WP_014418374.1 competence type IV pilus minor pilin ComGF -
  K9864_RS13225 (K9864_13130) comGE 2663469..2663783 (-) 315 WP_032863566.1 competence type IV pilus minor pilin ComGE Machinery gene
  K9864_RS13230 (K9864_13135) comGD 2663767..2664204 (-) 438 WP_007612572.1 competence type IV pilus minor pilin ComGD Machinery gene
  K9864_RS13235 (K9864_13140) comGC 2664194..2664502 (-) 309 WP_014418376.1 competence type IV pilus major pilin ComGC Machinery gene

Sequence

Protein


Download         Length: 111 a.a.        Molecular weight: 12972.64 Da        Isoelectric Point: 7.2023

>NTDB_id=605791 K9864_RS13185 WP_003153104.1 2659357..2659692(+) (sinR) [Bacillus velezensis strain HC-8]
MIGQRIKQYRKEKGYSLSELAEKAGVAKSYLSSIERNLQTNPSIQFLEKVSAVLDVSVHTLLDEKHETEYDGQLDSEWEK
LVRDAMTSGVSKKQFREFLDYQKWRKAQKEE

Nucleotide


Download         Length: 336 bp        

>NTDB_id=605791 K9864_RS13185 WP_003153104.1 2659357..2659692(+) (sinR) [Bacillus velezensis strain HC-8]
TTGATTGGCCAGCGTATTAAACAATACCGAAAAGAAAAAGGCTACTCACTATCAGAACTAGCTGAAAAAGCTGGGGTAGC
GAAGTCTTATTTAAGCTCAATAGAACGAAATTTACAGACGAACCCCTCCATTCAATTTCTCGAAAAAGTCTCCGCTGTTC
TGGACGTCTCGGTTCATACTTTACTTGATGAAAAACATGAAACCGAATACGATGGTCAATTAGATAGTGAATGGGAGAAA
TTAGTTCGCGATGCAATGACATCCGGGGTATCAAAAAAACAATTTCGTGAATTTTTAGATTATCAAAAATGGAGAAAAGC
GCAAAAAGAGGAGTAG

Domains

Predicted by InterproScan.

Helix-turn-helix (HTH_3)

(6-58)

Anti-repressor SinI (SinI)

(74-101)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  sinR Bacillus subtilis subsp. subtilis str. 168

99.099

100

0.991