Detailed information    

insolico Bioinformatically predicted

Overview

Name   pilM   Type   Machinery gene
Locus tag   LAJ61_RS08065 Genome accession   NZ_CP083409
Coordinates   1828552..1829604 (+) Length   350 a.a.
NCBI ID   WP_224053501.1    Uniprot ID   -
Organism   Moraxella osloensis strain FLMOS1     
Function   assembly of type IV pilus (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 1823552..1834604
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  LAJ61_RS08055 (LAJ61_08035) - 1824977..1825495 (+) 519 WP_007116392.1 DUF6586 family protein -
  LAJ61_RS08060 (LAJ61_08040) - 1825624..1828350 (-) 2727 WP_224053500.1 penicillin-binding protein 1A -
  LAJ61_RS08065 (LAJ61_08045) pilM 1828552..1829604 (+) 1053 WP_224053501.1 pilus assembly protein PilM Machinery gene
  LAJ61_RS08070 (LAJ61_08050) - 1829604..1830275 (+) 672 WP_224053502.1 PilN domain-containing protein -
  LAJ61_RS08075 (LAJ61_08055) - 1830278..1831039 (+) 762 WP_224053503.1 type 4a pilus biogenesis protein PilO -
  LAJ61_RS08080 (LAJ61_08060) - 1831026..1831559 (+) 534 WP_224053504.1 pilus assembly protein PilP -
  LAJ61_RS08085 (LAJ61_08065) pilQ 1831577..1833907 (+) 2331 WP_224053505.1 type IV pilus secretin family protein -
  LAJ61_RS08090 (LAJ61_08070) - 1834015..1834551 (+) 537 WP_160002372.1 shikimate kinase -

Sequence

Protein


Download         Length: 350 a.a.        Molecular weight: 38349.73 Da        Isoelectric Point: 4.6374

>NTDB_id=605684 LAJ61_RS08065 WP_224053501.1 1828552..1829604(+) (pilM) [Moraxella osloensis strain FLMOS1]
MRLFTKNNKLVVGVDITTTAIKMVEITRQQGLFHLRNYGIEPLPRGAVVDKNIVDIDAVSDALARLSRGRGFSSKHIATA
VSGSSVISKIIEMEADLTELERESRIRLDADQYIPYPLSEVNLDFEVIGPSATPDMCKVLLVASRTENVDQRVDAGALAG
LDTKIVDVEAYAVERAFQLMVDSLPGQPQHVALIDIGHSQTTLYIAKDGEFVYSREQLFGGAQLTESIQSRYGLTFEEAM
INKRTLSLPDDYYTDVLMPFLDAIVQQITRSLQFYFSSSQNSQVDYILLGGGSASIAGLASMVEQKLGTRTGIANAFSNM
TINNHINTELLIMDAPSLIAACGLALRSFD

Nucleotide


Download         Length: 1053 bp        

>NTDB_id=605684 LAJ61_RS08065 WP_224053501.1 1828552..1829604(+) (pilM) [Moraxella osloensis strain FLMOS1]
GTGAGGTTATTTACAAAAAACAACAAGCTGGTCGTTGGGGTAGATATCACCACCACTGCGATAAAAATGGTTGAAATAAC
ACGGCAGCAAGGTCTATTTCATTTAAGAAATTATGGCATTGAACCGTTACCCCGCGGTGCAGTTGTGGATAAAAATATTG
TAGATATTGACGCGGTTAGTGACGCCCTCGCAAGATTATCCCGTGGTAGAGGCTTTTCTAGTAAACATATCGCGACAGCC
GTATCTGGGTCTTCGGTTATTAGCAAAATTATTGAGATGGAAGCGGATCTCACAGAGCTTGAAAGAGAATCTCGTATCCG
TCTGGATGCTGACCAATATATTCCCTATCCTTTATCAGAAGTCAATTTAGATTTTGAAGTGATAGGTCCTTCAGCCACGC
CTGATATGTGTAAGGTATTGTTGGTTGCCTCTCGCACTGAAAATGTCGACCAACGTGTCGATGCGGGTGCTTTAGCGGGA
CTGGATACTAAAATTGTGGATGTAGAGGCTTACGCAGTTGAACGCGCCTTTCAATTGATGGTCGATAGCTTGCCAGGTCA
ACCTCAGCATGTAGCCCTCATTGATATCGGGCATAGCCAAACCACGCTTTATATTGCAAAGGACGGGGAGTTTGTATACA
GCCGTGAACAGCTTTTTGGTGGCGCCCAGTTAACTGAAAGTATTCAAAGTCGTTATGGTTTGACGTTCGAGGAGGCGATG
ATTAATAAGCGCACCCTGTCATTGCCAGATGATTACTATACGGATGTATTAATGCCATTTTTAGATGCCATTGTGCAGCA
AATCACCCGCTCGCTGCAGTTTTATTTTTCATCCAGCCAAAATAGCCAAGTAGATTATATTTTGTTGGGTGGGGGTAGTG
CCAGCATTGCGGGTCTAGCAAGCATGGTTGAACAAAAACTTGGTACCCGCACAGGCATTGCCAATGCATTTTCAAATATG
ACGATTAATAACCATATCAACACTGAATTACTGATTATGGACGCGCCAAGCTTAATAGCGGCTTGTGGCTTGGCGTTACG
GAGTTTTGATTAA

Domains

Predicted by InterproScan.

Type IV pilus assembly protein PilM; (PilM_2)

(13-349)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  pilM Acinetobacter baumannii D1279779

51.852

100

0.52
  comM Acinetobacter nosocomialis M2

50.997

100

0.511
  comM Acinetobacter baylyi ADP1

48.433

100

0.486
  pilM Legionella pneumophila strain ERS1305867

42.776

100

0.431