Detailed information    

insolico Bioinformatically predicted

Overview

Name   comE   Type   Machinery gene
Locus tag   K7G90_RS09955 Genome accession   NZ_CP083396
Coordinates   2125907..2127217 (+) Length   436 a.a.
NCBI ID   WP_224045962.1    Uniprot ID   -
Organism   Pasteurella canis strain HL1500     
Function   type IV pilus biogenesis and function (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 2120907..2132217
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  K7G90_RS09930 (K7G90_001985) - 2120945..2123512 (-) 2568 WP_191135147.1 penicillin-binding protein 1A -
  K7G90_RS09935 (K7G90_001986) - 2123648..2124433 (+) 786 WP_049214653.1 hypothetical protein -
  K7G90_RS09940 (K7G90_001987) - 2124452..2124967 (+) 516 WP_224045960.1 hypothetical protein -
  K7G90_RS09945 (K7G90_001988) - 2124975..2125502 (+) 528 WP_224045961.1 hypothetical protein -
  K7G90_RS09950 (K7G90_001989) - 2125508..2125897 (+) 390 WP_263421672.1 pilus assembly protein PilP -
  K7G90_RS09955 (K7G90_001990) comE 2125907..2127217 (+) 1311 WP_224045962.1 type IV pilus secretin PilQ Machinery gene
  K7G90_RS09960 (K7G90_001991) aroK 2127434..2127961 (+) 528 WP_046339606.1 shikimate kinase AroK -
  K7G90_RS09965 (K7G90_001992) aroB 2127977..2129065 (+) 1089 WP_049214648.1 3-dehydroquinate synthase -
  K7G90_RS09970 (K7G90_001993) - 2129069..2129962 (+) 894 WP_049214647.1 Dam family site-specific DNA-(adenine-N6)-methyltransferase -
  K7G90_RS09975 (K7G90_001994) - 2130025..2130330 (-) 306 WP_115323520.1 DciA family protein -
  K7G90_RS09980 (K7G90_001995) secM 2130423..2130734 (+) 312 WP_223667851.1 secA translation cis-regulator SecM -

Sequence

Protein


Download         Length: 436 a.a.        Molecular weight: 48435.80 Da        Isoelectric Point: 6.3202

>NTDB_id=605640 K7G90_RS09955 WP_224045962.1 2125907..2127217(+) (comE) [Pasteurella canis strain HL1500]
MQKGVNYCIKCGLLWLSFVCCVLAQSSETFSIRLKQAPLVEILQQLALQQNKSLVIDNELDGTLSLQLEQTSFEKLLYAV
AKIKQLELHKEGQLYYLSKGFKADKIKSESSQLSPNLVTDSIKLQFAKAEDVMKSLTTGNGSLLSVDGRISVDIRSNLLL
IQDQAESVRNIKKLVSEMDKPVEQIVIEARIVTMTDESLKELGVRWGMFDPTSHKHTLSGSLESNGFLNIQDHLNVNFAT
NVTPAGSIALQLAKINGRLLDLELTALERENNVEIIASPRLLTTNKKSASIKQGTEIPYIVTNGKNDTQSIEFREAVLGL
DVTPQISKDNTILLDMVVSQNSLGPRVTYDKGESISIDKQEINTQVFAKDGETIVLGGVFHDTIMKGVDKVPLLGDLPVL
KHLFSKESERHQKRELVIFVTPHILKQNEIVAKSEQ

Nucleotide


Download         Length: 1311 bp        

>NTDB_id=605640 K7G90_RS09955 WP_224045962.1 2125907..2127217(+) (comE) [Pasteurella canis strain HL1500]
ATGCAAAAAGGGGTTAATTATTGTATTAAGTGCGGTCTATTATGGCTTAGTTTTGTTTGTTGTGTGCTAGCGCAATCTAG
TGAGACGTTTTCTATTCGCTTAAAGCAAGCCCCACTAGTTGAAATTTTGCAACAATTAGCGTTACAACAAAACAAAAGTT
TAGTCATTGATAATGAATTAGATGGTACGTTATCACTGCAATTAGAGCAAACTAGTTTTGAGAAATTGTTATATGCCGTA
GCTAAGATTAAACAATTAGAGCTACACAAAGAAGGTCAATTGTATTATTTGAGTAAAGGTTTTAAAGCGGACAAAATAAA
GAGTGAAAGTAGTCAGCTAAGTCCTAATTTAGTAACAGACTCAATAAAATTACAATTTGCTAAAGCAGAAGATGTGATGA
AATCATTGACTACTGGTAATGGCTCTTTATTATCGGTAGATGGGCGTATTAGTGTAGATATACGCAGTAATTTATTGTTA
ATTCAAGATCAAGCTGAATCAGTCCGAAATATTAAAAAATTAGTATCAGAAATGGATAAACCTGTTGAACAAATCGTGAT
TGAAGCGCGAATTGTCACTATGACCGATGAAAGCCTAAAAGAGCTGGGCGTTAGATGGGGAATGTTTGATCCTACTTCTC
ATAAACATACTTTATCAGGTAGTTTAGAAAGTAATGGCTTTTTGAATATTCAAGATCATCTCAATGTTAATTTTGCAACT
AATGTAACACCTGCAGGAAGCATTGCATTACAACTAGCAAAAATTAATGGTCGCTTATTAGATTTGGAATTAACTGCACT
TGAACGAGAGAATAATGTTGAAATTATTGCTAGCCCACGTTTGTTAACGACGAATAAGAAAAGTGCCAGTATTAAGCAGG
GAACAGAAATACCTTATATTGTGACGAATGGTAAAAATGATACACAATCTATTGAATTTCGTGAAGCAGTACTAGGTTTA
GATGTTACACCACAAATCTCAAAAGATAATACTATTTTATTAGATATGGTGGTTAGTCAAAACTCATTAGGACCGAGAGT
GACTTATGATAAAGGCGAAAGTATTTCAATAGATAAGCAAGAAATTAATACTCAAGTTTTTGCAAAGGATGGTGAAACTA
TTGTTTTAGGCGGAGTATTTCATGATACGATAATGAAAGGCGTAGACAAAGTGCCTCTGCTTGGTGATTTACCTGTATTA
AAACATCTATTTAGTAAAGAAAGTGAACGTCATCAAAAGCGGGAGCTCGTTATTTTTGTGACACCACATATTTTAAAGCA
GAATGAAATAGTCGCAAAATCAGAGCAGTAG

Domains

Predicted by InterproScan.

Bacterial type II and III secretion system protein (Secretin)

(266-426)

Bacterial type II/III secretion system short domain (Secretin_N)

(121-184)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comE Haemophilus influenzae Rd KW20

65.446

100

0.656
  comE Haemophilus influenzae 86-028NP

65.217

100

0.654
  comE Glaesserella parasuis strain SC1401

49.531

97.706

0.484
  pilQ Vibrio cholerae O1 biovar El Tor strain E7946

41.509

97.248

0.404
  pilQ Vibrio cholerae strain A1552

41.509

97.248

0.404
  pilQ Vibrio campbellii strain DS40M4

39.908

100

0.399