Detailed information    

insolico Bioinformatically predicted

Overview

Name   pilM   Type   Machinery gene
Locus tag   LAJ50_RS06425 Genome accession   NZ_CP083376
Coordinates   1464161..1465216 (+) Length   351 a.a.
NCBI ID   WP_224096495.1    Uniprot ID   -
Organism   Pseudoxanthomonas sp. X-1     
Function   assembly of type IV pilus (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 1459161..1470216
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  LAJ50_RS06415 (LAJ50_06420) - 1460692..1461351 (-) 660 WP_130551672.1 hypothetical protein -
  LAJ50_RS06420 (LAJ50_06425) - 1461469..1463937 (-) 2469 WP_138654510.1 penicillin-binding protein 1A -
  LAJ50_RS06425 (LAJ50_06430) pilM 1464161..1465216 (+) 1056 WP_224096495.1 pilus assembly protein PilM Machinery gene
  LAJ50_RS06430 (LAJ50_06435) - 1465216..1465929 (+) 714 WP_138654508.1 PilN domain-containing protein -
  LAJ50_RS06435 (LAJ50_06440) - 1465926..1466597 (+) 672 WP_138654506.1 type 4a pilus biogenesis protein PilO -
  LAJ50_RS06440 (LAJ50_06445) - 1466594..1467133 (+) 540 WP_138654504.1 pilus assembly protein PilP -
  LAJ50_RS06445 (LAJ50_06450) - 1467148..1469016 (+) 1869 WP_138654502.1 type IV pilus secretin PilQ family protein -

Sequence

Protein


Download         Length: 351 a.a.        Molecular weight: 37661.34 Da        Isoelectric Point: 4.4558

>NTDB_id=605444 LAJ50_RS06425 WP_224096495.1 1464161..1465216(+) (pilM) [Pseudoxanthomonas sp. X-1]
MGLIPKSQSALLGVDISSTAVKLLQLTRVGNRFRVEHYAVEPLPPNAVVEKNIVEVEAVGEAIRRAVNRAGTKVKHAAAV
AGSAVITKIIPMPADLDEDELEAQIELEAVNYIPYPIEEVNLDFEVLGPMPGNPEMVQVLLAASRSENVELRQSALELGG
LTAKVMDVEAFAVENAFALLAGDLPVPHDGVVALVDIGATMTTLNVIRSGRSLYSREQVFGGKQLTDEVMRRYGLTYEEA
GMAKRQGGLPESYEIEVLEPFKEATVQQVSRLLQFFYAGSEFNRVDQIVLAGGCAALAGLPEMVEEQLGVPTVVANPLAQ
MTLGPKVHAHALAQDAPALMIATGLALRSFD

Nucleotide


Download         Length: 1056 bp        

>NTDB_id=605444 LAJ50_RS06425 WP_224096495.1 1464161..1465216(+) (pilM) [Pseudoxanthomonas sp. X-1]
GTGGGGCTCATCCCGAAAAGCCAATCTGCGCTGCTTGGCGTGGATATCAGTTCGACTGCGGTCAAGCTGCTGCAGCTCAC
GCGCGTGGGCAATCGCTTCCGTGTCGAGCACTACGCCGTCGAACCCCTGCCTCCCAACGCGGTGGTGGAGAAGAACATCG
TCGAGGTCGAGGCGGTCGGCGAGGCCATCCGCCGCGCCGTCAACCGTGCCGGCACCAAGGTGAAGCATGCCGCCGCCGTC
GCCGGGTCGGCGGTGATCACCAAGATCATCCCCATGCCCGCCGACCTGGACGAGGACGAGCTGGAAGCCCAGATCGAACT
CGAGGCGGTCAACTACATCCCGTACCCGATCGAGGAAGTGAACCTGGACTTCGAGGTCCTGGGTCCGATGCCCGGCAACC
CGGAGATGGTGCAGGTGCTGCTGGCCGCCTCGCGCTCGGAGAACGTCGAGCTGCGCCAGTCCGCGCTGGAGCTGGGCGGC
CTGACCGCCAAGGTGATGGACGTGGAGGCCTTCGCGGTCGAGAACGCCTTCGCCCTGCTGGCCGGCGACCTGCCGGTCCC
GCATGACGGCGTGGTCGCGCTGGTGGACATCGGCGCCACCATGACCACGCTCAACGTCATCCGCAGCGGTCGCAGCCTCT
ACAGCCGCGAGCAGGTCTTCGGCGGCAAGCAGCTGACCGACGAGGTGATGCGCCGCTACGGACTCACCTACGAAGAGGCC
GGCATGGCCAAGCGCCAGGGCGGGCTGCCGGAAAGCTACGAGATCGAGGTGCTCGAGCCGTTCAAGGAAGCCACCGTCCA
GCAGGTCAGCCGCCTGCTGCAGTTCTTCTACGCCGGCAGCGAGTTCAACCGCGTCGACCAGATCGTGCTGGCCGGCGGCT
GCGCCGCACTGGCCGGCCTGCCGGAAATGGTCGAGGAGCAACTCGGCGTGCCGACCGTGGTGGCCAACCCGTTGGCGCAG
ATGACGCTGGGACCGAAGGTCCACGCGCACGCCCTGGCCCAGGACGCGCCGGCGCTGATGATCGCCACCGGCCTGGCGCT
GCGGAGCTTCGACTGA

Domains

Predicted by InterproScan.

Type IV pilus assembly protein PilM; (PilM_2)

(13-350)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  pilM Acinetobacter baumannii D1279779

51.989

100

0.521
  comM Acinetobacter nosocomialis M2

51.705

100

0.519
  comM Acinetobacter baylyi ADP1

50.852

100

0.51
  pilM Legionella pneumophila strain ERS1305867

45.977

99.145

0.456